Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1004 ATGGACTGTAATAACCATTTGAAATCTTCCTCCTCATCATCAGAGGAACAGATTGACATGATGTTGATGATGATGATGCAACTCCCTGAATTCTCTTCATCCAACAACAACAATGAATTTCCACCGTCAGATCAAGACTTCTATAACACACGTCCTCTTTCAGATTTAATCGATAACCCTCCAAATCCATTCCCTTGGTCATCATCTTCATCTTCATCACTACCCTTACAATCAACAAACAATATCTCTTTCACTAATAACAACTCCACTACTCCGTTAATCCTTCAGCAGCAGCAACAAACCCCACCGTTAATGTTTTCGAACGCGAACAACACCGACGCTGTTACGAATCCGAACCGTTACGGTGCGGCTGAGAAGAGAACCTCGATGGCCGCGATGAGGGAGATGATATTCCGAATAGCAGCGATGCAACCGATTTACATAGACCCGGAATCAGTAAAACCGCCAAAGAGAAGGAACGTGAAGATCTCAAAGGATCCTCAGAGCGTAGCAGCAAGACACAGAAGAGAAAGAATAAGCGAGAAAATAAGAATACTCCAGAGAATGGTGCCCGGTGGAACGAAGATGGATACTGCATCAATGTTGGATGAAGCTATTCATTATGTTAAATTTCTCAAGACACAGTTGAAGACATTGCAGGAACATGCCAACAATAACAGGACTGTTGCTGGTTCTGGGATAGGGTTCCCTGTTTCATTGCCTAAACCTTATCAAGCTCGTAGTGTTGATCATTATGGTGATTAA 765 0.4261 MDCNNHLKSSSSSSEEQIDMMLMMMMQLPEFSSSNNNNEFPPSDQDFYNTRPLSDLIDNPPNPFPWSSSSSSSLPLQSTNNISFTNNNSTTPLILQQQQQTPPLMFSNANNTDAVTNPNRYGAAEKRTSMAAMREMIFRIAAMQPIYIDPESVKPPKRRNVKISKDPQSVAARHRRERISEKIRILQRMVPGGTKMDTASMLDEAIHYVKFLKTQLKTLQEHANNNRTVAGSGIGFPVSLPKPYQARSVDHYGD* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1004 254 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 6 240 IPR045843 GO:0003700|GO:0006355
Psa5g1004 254 SMART finulus 169 218 IPR011598 GO:0046983
Psa5g1004 254 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 167 222 IPR036638 GO:0046983
Psa5g1004 254 CDD bHLH_AtIND_like 164 222 - -
Psa5g1004 254 Pfam Helix-loop-helix DNA-binding domain 172 212 IPR011598 GO:0046983
Psa5g1004 254 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 163 212 IPR011598 GO:0046983
Psa5g1004 254 PANTHER BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN 6 240 - -
Psa5g1004 254 Gene3D - 162 230 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1004 Psa-Chr5 75307643 75309358 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1004 118 234 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 75.214 1.44e-49 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa5g1004 HLH 1.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1004 - - gmx:100815041 238.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1004 5 75307643 75309358 Psa5g1004 5 75307643 75309358 ECH