Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1003 ATGTTGGATCTGTTTTGGACAGGAAGTTTTCCACAATCAACGTCCATGTTGCAGATCACGTTTGGCATTGATGATGGTTGTAGTTTTGCAACTTTGTTGGCGGTGTTGGGAGAACAGCCCAGGCCAAGAGCAGACACTCCAATGGACAAGGAAGAGAGCAATGCCGAAGTCAAAGGATTGGATGTTGATGCTCTATATATTTCTCATATCCAAGTCAATCAAGCACAAAAGCAAAGACGCCGAACATACAGAGCTCATGGAAGAATCAACCCTTACATGTCATCCCCATGCCACATAGAGTTGGTACTATCTGAAAAGGAAGAACCTGTCAAGAAGGAGCCTGAGACCCAGTTGGCTTCTAGCAAGAAGAGGGCTTAA 378 0.4497 MLDLFWTGSFPQSTSMLQITFGIDDGCSFATLLAVLGEQPRPRADTPMDKEESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELVLSEKEEPVKKEPETQLASSKKRA* 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1003 125 SUPERFAMILY Ribosomal protein L22 51 106 IPR036394 GO:0003735|GO:0005840|GO:0006412
Psa5g1003 125 ProSitePatterns Ribosomal protein L22 signature. 79 103 IPR018260 GO:0003735|GO:0005840|GO:0006412
Psa5g1003 125 Pfam Ribosomal protein L22p/L17e 52 104 IPR001063 GO:0003735|GO:0005840|GO:0006412
Psa5g1003 125 PANTHER 60S RIBOSOMAL PROTEIN L17 50 121 IPR005721 GO:0003735|GO:0006412|GO:0015934
Psa5g1003 125 MobiDBLite consensus disorder prediction 105 125 - -
Psa5g1003 125 CDD Ribosomal_L22 52 103 IPR001063 GO:0003735|GO:0005840|GO:0006412
Psa5g1003 125 PANTHER RIBOSOMAL PROTEIN L17A 50 121 - -
Psa5g1003 125 Gene3D Ribosomal protein L22/L17 50 125 IPR036394 GO:0003735|GO:0005840|GO:0006412
Psa5g1003 125 TIGRFAM uL22_arch_euk: ribosomal protein uL22 49 106 IPR005721 GO:0003735|GO:0006412|GO:0015934
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1003 Psa-Chr5 75288519 75289057 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1003 48 125 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 83.333 2.15e-44 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1003 K02880 - cit:102628450 132.494