Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0988 ATGGCAACAAAGAGAAACCACTCAACCAAATGGATAATCCTCTCACTGTTACTACTCACAACAACATTCTCCAACTCCACCAAACTCAAAACAACACCCTCGCCTCTCTCAGATCCTACTTCCCTCTTAGCATTCAAATCAAAAGCTGATATAAACAACCACCTCAACTTCACCACCAAAACTCCTTTCTGCAACTGGCAAGGTGTAGAATGCAACGGACCTAAAGTAGTTCGTCTCGTCCTCCGAAGCCTAGATCTCGGCGGCGTCTTCGCTTCTCACACATTATCCCTTCTCGACCAGCTCCGTGTTCTCAGTTTACAGAACAACTCCCTCACCGGAGCCATCCCTGACCTCTCCGGTCTCTTCAATCTCAAAACGCTCTTCCTTGATAACAACCACTTCACTGGTTCACTTCCGCTTTCACTTTTCACTCTTCACAGACTCAAAACCATAGATTTCTCTCACAACAATCTCTCTGGAGATATACCTATAGATTTCATAAACCTCGACCGTCTTTACTATCTTCGTTTAAGCTTCAACGCTTTCAATGGTACTATTCCTCCTTTTAATCAGTCTTCTCTCCGAACTTTTGATGTCTCCGGTAACAATCTCTCCGGCGCAGTTCCGTTAACCACCACGCTGTCTCGTTTTCAGCCTTCTTCTTTTGCTTTAAACCCTAACCTCTGTGGAGAAATCATTCGGAGAGAATGTCGTCCAACAACGCCGTTTTTTGCTCCTACCTCGCCTCCGACAGTTGGAATCGGTCAGAGCGCGGATGTTCACGGTTTAATACGGCAGCCGTACGAGAAGAAACACAATCGGAAAGCGGCGATAATCGGATTCTCCACCGGGATAGTGTTTCTAATACTTTCCCTTACGTGTTTCGCGGTGGCAGTGAAGAAACAGAGGAAGAAGAAAGGTAAAGGCTCCTCCGGTTCGAGCGTGATGGCTTCGGATGCGGCGGCGACTGCGGAAGCTGCGGTTGTGATGCAAATGGAGCAAGAGAGGGAGTTAGAAGAAAAGGTGAAAAGAGCTCAAGTTGCTAAGAGTGGGAGTTTAATATTCTGTGCGGGTGAGTCACAGGTGTATACGCTGGACCAGTTGATGAAAGGATCTGCGGAGCTTTTAGGTAGAGGGTGTTTGGGTACAACTTACAAAGCAGTGTTGGATAACCGTTTGATTGTAACGGTGAAGCGTTTTGATTGTGGGAAAATGGGTGGACACGTAAGCAAAGAAGTGTTCGAGCGTCACATGGAATCAGTTGGTGGTCTTAGGCATCCAAATTTGGTTCCTCTAAGGGCTTATTTTCAAGCAAATCATGAGAGACTTATTATCTATGATTATCAACCCAATGGCAGTTTATTCTCTCTCATACATGGTTCCAGATCAAGCAGGGCAAGGCCATTGCACTGGACATCATGCTTAAAAATAGCAGAGGATGTAGCACAAGGGCTTTCATACATCCACCAGGCATGGAGACTGGTCCATGGCAATCTCAAATCCACCAATGTTCTTCTAGGACCCGATTTCGAAGCTTGTGTCACAGACTACTGCCTGTCTGTGTTGACTAATCCGTCTACTTTTGACGAGGTTGGTGATTCTGCACCCTATAGAGCTCCAGAAACTCGCACTCCAAATCACCAGCCGACCCCCAAATCCGATGTTTATGCTTATGGTATTTTGTTACTAGAGCTTCTGACTGGGAAATATGCCTCCGAGCTTCCATTCATGGTGCCTGGTGATATGTCAAAATGGGTGAGATCAATCAGGGATGACAATGGGAGCGAAGACAACAGAATGGATATGCTTCTTCAGGTGGCTACAACTTGTAGCTTGATCTCTCCTGAGCAGAGACCCACAATGTGGCAGGTCTTGAAGATGTTACAGGAAATCAAAGAGATTGTACTATTGGAGGATAGTGAAGTGGATGTACGCAGTAGTAATGTCGTTGCCATGTCTTAG 1962 0.4602 MATKRNHSTKWIILSLLLLTTTFSNSTKLKTTPSPLSDPTSLLAFKSKADINNHLNFTTKTPFCNWQGVECNGPKVVRLVLRSLDLGGVFASHTLSLLDQLRVLSLQNNSLTGAIPDLSGLFNLKTLFLDNNHFTGSLPLSLFTLHRLKTIDFSHNNLSGDIPIDFINLDRLYYLRLSFNAFNGTIPPFNQSSLRTFDVSGNNLSGAVPLTTTLSRFQPSSFALNPNLCGEIIRRECRPTTPFFAPTSPPTVGIGQSADVHGLIRQPYEKKHNRKAAIIGFSTGIVFLILSLTCFAVAVKKQRKKKGKGSSGSSVMASDAAATAEAAVVMQMEQERELEEKVKRAQVAKSGSLIFCAGESQVYTLDQLMKGSAELLGRGCLGTTYKAVLDNRLIVTVKRFDCGKMGGHVSKEVFERHMESVGGLRHPNLVPLRAYFQANHERLIIYDYQPNGSLFSLIHGSRSSRARPLHWTSCLKIAEDVAQGLSYIHQAWRLVHGNLKSTNVLLGPDFEACVTDYCLSVLTNPSTFDEVGDSAPYRAPETRTPNHQPTPKSDVYAYGILLLELLTGKYASELPFMVPGDMSKWVRSIRDDNGSEDNRMDMLLQVATTCSLISPEQRPTMWQVLKMLQEIKEIVLLEDSEVDVRSSNVVAMS* 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0988 653 Pfam Protein kinase domain 374 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g0988 653 Gene3D Ribonuclease Inhibitor 191 236 IPR032675 -
Psa5g0988 653 ProSiteProfiles Leucine-rich repeat profile. 100 122 IPR001611 GO:0005515
Psa5g0988 653 Gene3D Phosphorylase Kinase; domain 1 330 448 - -
Psa5g0988 653 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 14 640 - -
Psa5g0988 653 Pfam Leucine rich repeat 123 181 IPR001611 GO:0005515
Psa5g0988 653 Gene3D Transferase(Phosphotransferase) domain 1 450 647 - -
Psa5g0988 653 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 14 640 - -
Psa5g0988 653 SUPERFAMILY Protein kinase-like (PK-like) 374 629 IPR011009 -
Psa5g0988 653 SUPERFAMILY L domain-like 38 229 - -
Psa5g0988 653 Gene3D Ribonuclease Inhibitor 36 190 IPR032675 -
Psa5g0988 653 ProSiteProfiles Protein kinase domain profile. 370 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0988 Psa-Chr5 74281909 74285821 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0988 38 648 Receptor kinase-like Gene Family AT5G43020 58.320 0.0 697
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Psa5g0988 Pkinase 2.6e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0988 - - cam:101511242 1107.43