Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0978 ATGTCTCACACTTTCCCCATGGATACCTTGTACTGCTCCGAAGAACATTGGGAGGAACAAGATGAGTTAGAATTCGAGTACGATAATGTTTCCTTAAACAACACAATAACAAACTCTACTCAATCTTTGTTCCTAGAAACCGACATGTTTTGGGACGATGAAGAACTCAAATCACTTCTCTCCAAAGAACAACAAAACCCTCTTCACATCTTTCTACAAACCAACCCTGTGTTGGAAACTTCTCGTAGAGAATCCATTGACTGGATTCTGAAAGTGAACGCTCATTACTCGTTCTCACCTCTCACCGCTGTTCTTGCTGTAAACTACCTCGATAGGTTTCTGTTCAGCTTTCGTTTACAGAATGAGAAGCCATGGATGACTCAGCTTTCCGCTGTTGCTTGTCTCTCTCTTGCTGCTAAAGTTGAAGAAACCCAAGTTCCTCTTTTACTAGATCTTCAAGTTGAGGAAAGTAGATACTTGTTTGAAGCAAAGACGATAAAAAAGATGGAGATTTTGGTTCTTTCAACACTAGGGTGGAAGATGAATCCTGCAACACCTCTCTCTTTTATAGATTATACAATAAGAAGACTTGGATTGAAAGATCGTCTTTGTTGGGAGTTTCTTAATAGATGTGAAAATGTTGTTCTCTCTGTCATTAGATCAGATTCAAAGTTTATGAGTTATCTACCTTCTGTCATGGCAACTGCTACGATGATTCATGTTTTCAACAGTGTTGAGCCTAGTTTAGGAGATGAATACAAAAACCAGCTTCTTGGTATTCTTGGAATCAACAAAGAAAAAGTGGATGAATGTGGGAAGCTGATGATGAAAGTGTGGACAGAATATGAAGAGGAGAATGAGAATCGATTCAACAAACGTAAGTTTGGGTCAATTCCAAGTAGTCCAAATGGTGTAATGGATGTGTCATTTAGCTCTGAAAATTCCAATGATTCATGGGCTATAGCAACAGTTTCAGTATCATCTTCACCAGAGCCTTTGTCAAAGAAGACCAAAACTCAACAACAGTTTCTATTAAACTCTTCATAG 1047 0.3859 MSHTFPMDTLYCSEEHWEEQDELEFEYDNVSLNNTITNSTQSLFLETDMFWDDEELKSLLSKEQQNPLHIFLQTNPVLETSRRESIDWILKVNAHYSFSPLTAVLAVNYLDRFLFSFRLQNEKPWMTQLSAVACLSLAAKVEETQVPLLLDLQVEESRYLFEAKTIKKMEILVLSTLGWKMNPATPLSFIDYTIRRLGLKDRLCWEFLNRCENVVLSVIRSDSKFMSYLPSVMATATMIHVFNSVEPSLGDEYKNQLLGILGINKEKVDECGKLMMKVWTEYEEENENRFNKRKFGSIPSSPNGVMDVSFSSENSNDSWAIATVSVSSSPEPLSKKTKTQQQFLLNSS* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0978 348 PANTHER CYCLIN D3.1 PROTEIN 31 338 - -
Psa5g0978 348 SMART Cyclin_C_2 184 314 IPR004367 -
Psa5g0978 348 Pfam Cyclin, N-terminal domain 63 182 IPR006671 -
Psa5g0978 348 PANTHER CYCLINS 31 338 IPR039361 -
Psa5g0978 348 ProSitePatterns Cyclins signature. 82 113 IPR006671 -
Psa5g0978 348 SUPERFAMILY Cyclin-like 49 182 IPR036915 -
Psa5g0978 348 Gene3D - 69 182 - -
Psa5g0978 348 SMART cyclin_7 87 175 IPR013763 -
Psa5g0978 348 MobiDBLite consensus disorder prediction 325 348 - -
Psa5g0978 348 SUPERFAMILY Cyclin-like 166 294 IPR036915 -
Psa5g0978 348 Pfam Cyclin, C-terminal domain 185 310 IPR004367 -
Psa5g0978 348 Gene3D - 59 272 - -
Psa5g0978 348 CDD CYCLIN 81 174 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0978 Psa-Chr5 73530992 73533154 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0978 2 278 Core Cell Cycle Gene Families AT4G34160 52.158 2.67e-96 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0978 K14505 - tcc:18591134 446.817
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0978 5 73530992 73533154 Psa6g5028 6 435561543 435563872 ECH
Psa5g0978 5 73530992 73533154 Psa5g0978 5 73530992 73533154 ECH