Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0960 ATGAACTCCACGCAATGCATCCAGGTGATAACACGTGATAACACTGTATGTCAATTTACTGAAGTGCATCCTGTTCTTAATTATCATGCTAACAAAGATCCATCCTGGACCGTTAAAGGCTTAATCGAGACAAGCAGATGTATAGGATATGCTTACATGAAGAAGGCATTGTTTACTATGGCAAGATCATTCGTAATCCCAATGCGAGAACAGGTGATATTTGGAAGGCCTTTGCTGACCTCTGAACCAGATGTTTATTCAAAAGTGCTTAAAGACACTGACAGCTTCATTATATTTGGATCAAGTGGATTTTGGAAATTAATCACAAACGATTATGCTGCTGAAATTGTTAACAGCAGTCCTCGGGATGATATCGCGAAAATACTAGCAGTAATTGCTATAGAGAAGGGGGCTAGGAAAAAGAAAACTAAAAACGATTATGCTGCTGAAATTGTTAACAGCAGTCCTCGGGATGATATCGCGAAAATACTAGCAGTAATTGCTATAGAGAAGGGGGCTAGGAAAAAGAAAACTAAGTATAGCAACATTGTTGAGATTCCTAAGGGAGAACACGTTGATGGCTGTTGGGGTGTGCAACATCAGAGATCTAGGCCTGTCTATCACAATGATATCATTGTGATAGTTGTCTTTTTCGACAATAAGCCAAGCAGTGTGAGGCCTGAGATCAGTTGTTATACATGCAGTGATTTTCCCGATACACCTTCGGAGATTTTAAGGGAAGTTGTTGAGGATATAGAAAATAGATTTATTCTATTTGCTGAGAGGAGTTTTGAGCAAGAATATCATAAAGAAGACATTGGCTTAGTTAGTTCCGGTTGTTTGATTTGCCTCATTTGGAGAGGGATTATCTATCTTGCCAACGTTGGAAGTTCGCGTGCAGTACTTGGTTCAATTGAGGCTAATGGTTTATCTCAGAAATTATGCGTGACTCAATTGGTTAGACATCATAGTTGCGAAAATCCGGATATTAGAAATAAACTCCATGCAATGCATCCAGGTGATAACACTCTATGTCAATTTACTGAAGTGCATCTTGTTCTTAATTATCATGCGAACAAAGATCCATCCTGGACCGTTAAAGGCTTAATCGAGACAAGCAGATGTATAGGATATGCTTACATGAAGAAGGCATTGTTTACTATCGCAAGATCATTCGTAAACCCAATGCGAGAACAGGTGATATTTGGAAGGCCTTTGTTGACCTCTGAACCAGATGTTTGTTCAAAAGTGCTTAAAGACACTGACAGCCTCATTATATTTGGATCCAGTGGATTTTGGAAATTAATCACAAACAATTATGCTGCTGAAATTGTTAACAGTAGTCCTCGGGATGATATCGCGAAAATACTAGCAGTAATTGCTATAGAGAAGGGGGCTAGGAAAAAGAAAACTAAGTATAGCGGCATTGTTGAGATTCCTAAGGGAGAACACGTTGATGGTTGTTGGGGTGTGCAACTTCAGAGATCTAGGCATGTCTATCACAATGATATCACTGTGATAGTTGTCTTTTTCGACAATAGGCCAAGCAGTGTGAGGCCTGAGATCAGTTGTTATACATGCAGTGATTTTCCTTATACAACTTCGGAGTTTACGCATTTCTATAATAATAATAATATGAAGGTATGA 1647 0.3892 MNSTQCIQVITRDNTVCQFTEVHPVLNYHANKDPSWTVKGLIETSRCIGYAYMKKALFTMARSFVIPMREQVIFGRPLLTSEPDVYSKVLKDTDSFIIFGSSGFWKLITNDYAAEIVNSSPRDDIAKILAVIAIEKGARKKKTKNDYAAEIVNSSPRDDIAKILAVIAIEKGARKKKTKYSNIVEIPKGEHVDGCWGVQHQRSRPVYHNDIIVIVVFFDNKPSSVRPEISCYTCSDFPDTPSEILREVVEDIENRFILFAERSFEQEYHKEDIGLVSSGCLICLIWRGIIYLANVGSSRAVLGSIEANGLSQKLCVTQLVRHHSCENPDIRNKLHAMHPGDNTLCQFTEVHLVLNYHANKDPSWTVKGLIETSRCIGYAYMKKALFTIARSFVNPMREQVIFGRPLLTSEPDVCSKVLKDTDSLIIFGSSGFWKLITNNYAAEIVNSSPRDDIAKILAVIAIEKGARKKKTKYSGIVEIPKGEHVDGCWGVQLQRSRHVYHNDITVIVVFFDNRPSSVRPEISCYTCSDFPYTTSEFTHFYNNNNMKV* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0960 548 PANTHER ALPHABET, ISOFORM E-RELATED 31 147 - -
Psa5g0960 548 PANTHER ALPHABET, ISOFORM E-RELATED 242 514 - -
Psa5g0960 548 PANTHER ALPHABET, ISOFORM E-RELATED 144 221 - -
Psa5g0960 548 SMART PP2C_4 185 509 IPR001932 -
Psa5g0960 548 Gene3D - 224 517 IPR036457 -
Psa5g0960 548 Gene3D - 2 223 IPR036457 -
Psa5g0960 548 SUPERFAMILY PP2C-like 7 218 IPR036457 -
Psa5g0960 548 Pfam Protein phosphatase 2C 275 466 IPR001932 -
Psa5g0960 548 Pfam Protein phosphatase 2C 36 138 IPR001932 -
Psa5g0960 548 ProSiteProfiles PPM-type phosphatase domain profile. 1 167 IPR001932 -
Psa5g0960 548 PANTHER PROTEIN PHOSPHATASE 2C 68-RELATED 31 147 - -
Psa5g0960 548 PANTHER PROTEIN PHOSPHATASE 2C 68-RELATED 242 514 - -
Psa5g0960 548 PANTHER PROTEIN PHOSPHATASE 2C 68-RELATED 144 221 - -
Psa5g0960 548 ProSiteProfiles PPM-type phosphatase domain profile. 192 511 IPR001932 -
Psa5g0960 548 SUPERFAMILY PP2C-like 242 514 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0960 Psa-Chr5 72979876 72982510 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0960 243 513 PP2C-type Phosphatase Gene Family AT5G06750 35.531 6.00e-44 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0960 K01102 - gmx:100806476 174.096