Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0944 ATGATTGAAACACGCTCTTCAAAGAGAAAATCCAACCACCAGATTCAACCCATCAACAAGAAGCGTGTTGTGTTAGGGGAACTTCCCAATTCAACCAATCTCACTGTTACTCAAAAAAACCTTAACCCAAGAAAACCAACACCGGGGAAGAAGAAGAAGAACCCTAGTGAAGATTTTGATGGCCCGGTTGTTTCTGAGATTTACATGTATCTTCGATCAATGGAGATGGAGAAAAAGAGAAGACCGATGATGGATTACATGGTTATAGTTCAGAGAGATATTACTCCACATATGAGAGGGATTTTGGTTGATTGGTTAGTTGAGGTTGCGGAAGAATACAAGCTTGTTCCTGATACACTTCATCTCGCTGTTTCATACATAGATAGGTTTCTGTCTTTTAATGATATCAATAGGACCAAGCTTCAGTTGTTGGGTGTTTCATCAATGCTCATTGCATCGAAACATGAAGAAATAAGCCCACCTTATGTGGAAGAGTTCTGTTTTATAACTGACAATTCGTATAACAAAGATGAGGTTTTAGAGATGGAAGCTGACATACTCAAAACCCTAGAGTTTGATACAGCCAATCCCACTGTTAAGACTTTTCTAAGGAGGTTTAATGAAATTGCCTGTGAGAAAAAAAATGCTTCAAGTTTGCAGTTTGAGTTCTTAAGTAACTATCTTGCTGAGCTAAGTTTATTGGATTGTGTTTGTTTGAGATTCTTGCCTTCTTTGGTGGCCGCGTCTGCCACACTGCTTGCTCGATTCATTGTTTGGCCTAAAGCTTATCCTTGGACACCAACCCTGCAAGAATACTCTAGATATAGACCAGACGAGTTGAAAGAATGTGTTCTCATCTTACATGATTTGTATATGGCTAGAAGGGAAGCTTCATTTGACGCTTCTCGAGAGAAATACAAGCAGCACAAGTTTAAACATGTGGCAAACCTGCCTTCGCCTCCTCATTTACCAAGTTCTCTGTTTGAAGTAGAGTGA 996 0.3966 MIETRSSKRKSNHQIQPINKKRVVLGELPNSTNLTVTQKNLNPRKPTPGKKKKNPSEDFDGPVVSEIYMYLRSMEMEKKRRPMMDYMVIVQRDITPHMRGILVDWLVEVAEEYKLVPDTLHLAVSYIDRFLSFNDINRTKLQLLGVSSMLIASKHEEISPPYVEEFCFITDNSYNKDEVLEMEADILKTLEFDTANPTVKTFLRRFNEIACEKKNASSLQFEFLSNYLAELSLLDCVCLRFLPSLVAASATLLARFIVWPKAYPWTPTLQEYSRYRPDELKECVLILHDLYMARREASFDASREKYKQHKFKHVANLPSPPHLPSSLFEVE* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0944 331 SUPERFAMILY Cyclin-like 62 193 IPR036915 -
Psa5g0944 331 SMART cyclin_7 201 289 IPR013763 -
Psa5g0944 331 SMART cyclin_7 104 188 IPR013763 -
Psa5g0944 331 Gene3D - 80 195 - -
Psa5g0944 331 MobiDBLite consensus disorder prediction 26 44 - -
Psa5g0944 331 Pfam Cyclin, N-terminal domain 66 194 IPR006671 -
Psa5g0944 331 PANTHER CYCLIN-A3-1-RELATED 62 330 - -
Psa5g0944 331 Gene3D - 66 316 - -
Psa5g0944 331 SUPERFAMILY Cyclin-like 197 322 IPR036915 -
Psa5g0944 331 MobiDBLite consensus disorder prediction 1 58 - -
Psa5g0944 331 ProSitePatterns Cyclins signature. 99 130 IPR006671 -
Psa5g0944 331 CDD CYCLIN 98 187 IPR013763 -
Psa5g0944 331 Pfam Cyclin, C-terminal domain 197 319 IPR004367 -
Psa5g0944 331 PANTHER CYCLINS 62 330 IPR039361 -
Psa5g0944 331 CDD CYCLIN 197 288 IPR013763 -
Psa5g0944 331 SMART Cyclin_C_2 197 320 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0944 Psa-Chr5 72576220 72578780 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0944 6 329 Core Cell Cycle Gene Families AT5G43080 53.043 3.63e-125 361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0944 K06627 - gmx:100776007 393.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0944 5 72576220 72578780 Psa5g0944 5 72576220 72578780 ECH