Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0943 ATGGGGAGAGTGAAGCTTCAGATCAAAAAGATTGAGAACACAACAAATAGACAAGTCACTTTCTCGAAGAGGAGAAATGGTTTAATGAAGAAAGCTTATGAACTTTCTGTTCTCTGTGATGTTGATGTTGCTCTCATCATGTTTTCTCCTTCTGGTAGAGCCACTCTCTTTTCTCGCAACAGAAGCGTTGAAGAAATTCTTGATCGATATATAAATCTTCCAGATAGTGAACGTGGAAGGATGCATAATCAAGAGCATATTCAAAAGGTTCTTCATAGGTTGAAAGCCGAAACCGATCAAATATGTCAAGCTTCTAGCGCGATGAATGTAGAAGCAAAACTCAAGGAGGTTCAAAGAGAAGTTCTTATTTACAGGTCTCAATTGGAAGAGATGACGAATCGGCTGAGGGTTTTCGAAGGAGATCCTTCTGAGATTAACACATTAAGTGAGGCCGAATATCGTGAACAGGTCCTTCAAGAAACTTTAAAACATGTACAAATGCGAAAACGTTTCTTGGAGGAAGAACATATTTCTCATGCATCTCCACAGGTACATCTTACAAAAGCTGTAGATATAGATGGATCTTCTGCTGGAACTACAGAGAATGCATTAGGCTGGTTTTCAGGAGATACTATTACCAATGACCAGATTTTGAACTTTGTGAATGGTTATGACCCTCCTCCTCCTCTCAGTGATCAACAGTCACTAAATACTGTTGTCGATACAATGACGCCAACTTCAACCTTTCTGCACACTGCAAACATGGATCATGACTACCAAATTTGTCTCAAGGATGGTGCGGAGGCTGACATTAATAATACACCAAGTCCTGAGTTTGGACAAGTTATGGACACCAGTTTGGATTTTTGGGCAAACGTATATCATTCAGGGTCATTGTCAATTGCAGAAACAAGAGAAGAAGAACTACTTGAACAGAATTTGCTCAATGTATTCCCTCAAATATTTTAA 969 0.3922 MGRVKLQIKKIENTTNRQVTFSKRRNGLMKKAYELSVLCDVDVALIMFSPSGRATLFSRNRSVEEILDRYINLPDSERGRMHNQEHIQKVLHRLKAETDQICQASSAMNVEAKLKEVQREVLIYRSQLEEMTNRLRVFEGDPSEINTLSEAEYREQVLQETLKHVQMRKRFLEEEHISHASPQVHLTKAVDIDGSSAGTTENALGWFSGDTITNDQILNFVNGYDPPPPLSDQQSLNTVVDTMTPTSTFLHTANMDHDYQICLKDGAEADINNTPSPEFGQVMDTSLDFWANVYHSGSLSIAETREEELLEQNLLNVFPQIF* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0943 322 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Psa5g0943 322 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Psa5g0943 322 Coils Coil 107 134 - -
Psa5g0943 322 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Psa5g0943 322 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Psa5g0943 322 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Psa5g0943 322 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Psa5g0943 322 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL104 ISOFORM X1 1 303 - -
Psa5g0943 322 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 303 - -
Psa5g0943 322 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 55 IPR002100 GO:0003677|GO:0046983
Psa5g0943 322 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
Psa5g0943 322 Coils Coil 155 175 - -
Psa5g0943 322 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0943 Psa-Chr5 72574031 72576241 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0943 1 178 Type I MADS-box Gene Family AT1G22130 46.316 3.66e-50 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Psa5g0943 SRF-TF 4.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0943 - - cam:101506754 422.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0943 5 72574031 72576241 Psa5g0943 5 72574031 72576241 ECH