Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0941 ATGGAGAGTGATGGCTCAAAGATGAGTACAAACACCAATCAATCACCTCCTGTTCTTGTTCACAAAAGGCAGAGGGTTGTTTTAGAAGAATTTCCAGATCTCAGTGTTCCTCCTGGTTATCAGCCTATACAGAATTCCAATTTGGATGAGCCAATTGGTAACAAAAGTAATGTGAAACGTGACAATCAACAGATTGACGAGCCTTATGTATCTGATATCTCTCTTTATCTTCGCATGATGGAGATCGAGGAAAATCGAAAACCAGCGGTTGATTACGTGGAAAACGTTCAGAAACACATTACTACGAACATGAGGGCAACATTGGTTGATTGGTTAGTTGAGGTTGCAGATGAATACAAGCTTCTCTCAGAAACACTTCATCTAGCTGTTTCCTACATTGACAGATTCCTATCTATCCATTCTCTCAATAGATCCGAGCTTCAGTTGCTCGGTGTTTCCGCTATGCTCATTGCATCAAAGTATGAAGAAACCACTCCACCAAAAGCAGCGGATTTCTGCCAAAGTACTAATAACACCTATTCACTGCATGAGGTTTTAGAGATGGAAGCTCAGATACTCAAGACCCTGAATTATGAAATGGGAAACCCTAATGTCGTCACCTTTTTAAGGAGGTTTATCGCCATTGCTTCTGAGAATCGAAAGACTTCTAATTCGCAGTTTGAAAATTTGTGCAACTATCTTGCCGATTTAAGCCTGCTTGACTATGAGTGTATACAATTTAAGCCTTCCACTGTGGCTGCCTCTGTTATATTTCTTGCCAAATTTATTATCAAGCCTAGAGTGCATCCTTGGACTTTGTCCCTCTATGACTCATTGGTATATGGATCTGATGATTTGGAAGATTGTGTTATCATTCTACATGATTTATATTTGTCAAAAAGGGCATCATCCTTGAAAGCTATTCGTGACAAATACAAGAAGAAAAAGTTTAAATGTGTAGCAAACTTGCCCTCCCGGCCAGAGCTGCCAGAACGTTACTTTGAAGAAGTTCATGGCGAATAA 1023 0.3988 MESDGSKMSTNTNQSPPVLVHKRQRVVLEEFPDLSVPPGYQPIQNSNLDEPIGNKSNVKRDNQQIDEPYVSDISLYLRMMEIEENRKPAVDYVENVQKHITTNMRATLVDWLVEVADEYKLLSETLHLAVSYIDRFLSIHSLNRSELQLLGVSAMLIASKYEETTPPKAADFCQSTNNTYSLHEVLEMEAQILKTLNYEMGNPNVVTFLRRFIAIASENRKTSNSQFENLCNYLADLSLLDYECIQFKPSTVAASVIFLAKFIIKPRVHPWTLSLYDSLVYGSDDLEDCVIILHDLYLSKRASSLKAIRDKYKKKKFKCVANLPSRPELPERYFEEVHGE* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0941 340 SMART Cyclin_C_2 203 326 IPR004367 -
Psa5g0941 340 SUPERFAMILY Cyclin-like 61 200 IPR036915 -
Psa5g0941 340 CDD CYCLIN 104 193 IPR013763 -
Psa5g0941 340 Gene3D - 72 322 - -
Psa5g0941 340 ProSitePatterns Cyclins signature. 105 136 IPR006671 -
Psa5g0941 340 Pfam Cyclin, C-terminal domain 203 325 IPR004367 -
Psa5g0941 340 Pfam Cyclin, N-terminal domain 79 200 IPR006671 -
Psa5g0941 340 CDD CYCLIN 203 294 IPR013763 -
Psa5g0941 340 Gene3D - 86 201 - -
Psa5g0941 340 MobiDBLite consensus disorder prediction 1 19 - -
Psa5g0941 340 PIRSF Cyclin_A_B_D_E 34 336 IPR039361 -
Psa5g0941 340 PANTHER CYCLINS 56 337 IPR039361 -
Psa5g0941 340 MobiDBLite consensus disorder prediction 1 21 - -
Psa5g0941 340 SUPERFAMILY Cyclin-like 203 326 IPR036915 -
Psa5g0941 340 SMART cyclin_7 207 295 IPR013763 -
Psa5g0941 340 SMART cyclin_7 110 194 IPR013763 -
Psa5g0941 340 PANTHER CYCLIN-A3-1-RELATED 56 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0941 Psa-Chr5 72502023 72505236 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0941 23 338 Core Cell Cycle Gene Families AT5G43080 50.617 5.96e-115 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0941 K06627 - gmx:547779 360.918