Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0936 ATGGAGACCGGTGGCTCAAAGAAGAGAACAAACGGCACTGAATCACCTTCTGTTCTTGTTCCCAAAAGGCAGAGAGTAGTTTTGGAAGAATTTCCAGATCTCAATGTTCCTGATTATCATCCTAACCTCAACAAATCAGCATCAACATCAACCCTTTCTTTACTTCCGAATTCCAATTTGGATAACTCAGTTTGCAACAAAACCAATGCAAAGCGTGAAAGTATGCAGATTGTCGAGCCTTACGTATCTGATGTCTCCGTTTATCTTCGCATGATGGAGGTGCAGGAAAAACGAAGACCAGCGGTTGACTACATGGATAATGTTCAGAGATTCATTACTACAAACATGAGGGCAACATTGGTGGATTGGTTAGTTGAGGTTGCGGATGAATACAAACTTCTCCCTGAAACTCTTCATCTAGCTGTTTCCTACATTGACAGATTCCTATCTATCCATTCTCTCGATAGATCCAAGCTTCAGTTGCTTGGTGTCTCTGCCATGCTCATTGCTTCAAAGTATGAAGAAATCACTCCACCAAAAGCAGTGGATTTCTGCCAAATTACTGATAACACCTACGAACTGCATGAGGTTTTAGAAATGGAATCTCACATACTCAAGTCCCTAAATTTTGAAATGGGAAACCCTAATGTCACCACTTTCTTAAAGCAGTTTGTCACAATTGCATCTGAGAATCAAAAGACTTCCAATTTGCAGTTTGAATATTTGTGCAACTATCTTGCTGATTTAAGCCTGCTTGACTATGAGTGTCTACAATTCTTGCCTTCTGTTGTGGCTGCCTCTGTTATATTTCTTGCCAAATTTATTATCCGGCCTAGAGTACATCCTTGGACTTTGTCCCTTTATGAATCATTGGGTTATGGATCTGATGATTTGGAAGATTGTGTTACCATTCTACATGATTTGTATTTGTCAAGAAGGGCAGCATCCTTGAAAGCTGTTCGCGACAAATACAAGCAGAACAAGTTCAAACGTGTAGCAAACTTGCCTTCCATGCCAGAGCTGCGTGAACATTACTTTGAAGAAGTTCATGGCTCACAACTATAA 1065 0.4038 METGGSKKRTNGTESPSVLVPKRQRVVLEEFPDLNVPDYHPNLNKSASTSTLSLLPNSNLDNSVCNKTNAKRESMQIVEPYVSDVSVYLRMMEVQEKRRPAVDYMDNVQRFITTNMRATLVDWLVEVADEYKLLPETLHLAVSYIDRFLSIHSLDRSKLQLLGVSAMLIASKYEEITPPKAVDFCQITDNTYELHEVLEMESHILKSLNFEMGNPNVTTFLKQFVTIASENQKTSNLQFEYLCNYLADLSLLDYECLQFLPSVVAASVIFLAKFIIRPRVHPWTLSLYESLGYGSDDLEDCVTILHDLYLSRRAASLKAVRDKYKQNKFKRVANLPSMPELREHYFEEVHGSQL* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0936 354 SMART Cyclin_C_2 215 338 IPR004367 -
Psa5g0936 354 Pfam Cyclin, N-terminal domain 90 212 IPR006671 -
Psa5g0936 354 PANTHER CYCLIN-A3-1-RELATED 52 349 - -
Psa5g0936 354 SUPERFAMILY Cyclin-like 75 212 IPR036915 -
Psa5g0936 354 CDD CYCLIN 116 205 IPR013763 -
Psa5g0936 354 ProSitePatterns Cyclins signature. 117 148 IPR006671 -
Psa5g0936 354 MobiDBLite consensus disorder prediction 1 18 - -
Psa5g0936 354 CDD CYCLIN 215 306 IPR013763 -
Psa5g0936 354 PIRSF Cyclin_A_B_D_E 20 349 IPR039361 -
Psa5g0936 354 SMART cyclin_7 219 307 IPR013763 -
Psa5g0936 354 SMART cyclin_7 122 206 IPR013763 -
Psa5g0936 354 Gene3D - 84 334 - -
Psa5g0936 354 Pfam Cyclin, C-terminal domain 215 337 IPR004367 -
Psa5g0936 354 SUPERFAMILY Cyclin-like 215 338 IPR036915 -
Psa5g0936 354 MobiDBLite consensus disorder prediction 1 21 - -
Psa5g0936 354 PANTHER CYCLINS 52 349 IPR039361 -
Psa5g0936 354 Gene3D - 98 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0936 Psa-Chr5 72116806 72120676 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0936 1 350 Core Cell Cycle Gene Families AT5G43080 49.296 3.19e-116 339
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0936 K06627 - gmx:100786875 372.859