Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0909 ATGTCTTTACGATCAGAAGCTCCTGATATCAATATTGAAGCTGAATATTGTCCTGAAGCTGTGATTGAATGGTACCGTTTAACAAGACAAAAAGATGGTAAAAAAGTTGTTGGTAGAATGGTTTTGAGTTTGAAAGCAAAACAACATCTTGTTTTTTTGGGTTGGAAGCTTTGGTATGTCGACAAAAAATGTAAATGGGAATTGCGTTATACTTGTCCTACCACTGGAAAACATTATATCACTCTTAAGAATGCATGTGAAAGGTGTATTCAAGATGGAAGTTGTTCCATCAAACCGATGAAGTCAAACAAACGATTGAGAGATTCTAAAGAATATGATCAATCAAGTTCAAGTTCTAGTTCTGATGATGATTCTGATGTTAGTGACACTATAACTTCAACTTCAAAGGAAAATGAGAAATGTTCGAGTCGATGTGAGTCGGGATCGGAAGTTACTAATTCTATGCAGAGTGATAGAATAGGAAAGGTATTAAAGATGAGTGCAATGGAGAATTTTTCAGAAGGTTGTAACAAAAGAGGGGAGGTAATGAATGTGAGTACAAGGAAAAGGTGTACTCTTCTTTATTGGTTGATAGATAATCGAGTGTTGGCTTCGGGGACTAGTGTGTTATGTCGTGGTGGTAATGATATTGTCAAAAAAGGGAATATATTTTGTGATGGTATAGTTTGTGATTGTTGTCGTGATAATTTCACTATGACTGCATTTGAGGCGCATGCTTGTTGTACAAGACGTAGACCATCCACTAGTATCTGTTTAGAAGACGGGAGGTCGTTGTTCGAATGTCAAAGAGAAGCTCTGAGTTCATGTGGTAAAGAGGGGAGTCATTTTGTTGGCGAAGAAAAGATGGAAAAATATAATGATGTTGTTTGTTTAGTTTGTGGTTTAGGAGGTGAGATAATACTATGTGATCAATGTCCTTCTTCGTTTCATCTTGGTTGTTTAGGTCTTGATCGAGTTCCCGATGGTGATTGGTTTTGTCCAACTTGTTGTTGCAAAATATGTCATCAACCTAAATGCAAACATGAAGAATGTGAAGATGAAGAGGATAATGACATTATTGTTATTTGTGTTCAATGTGAGCAAAAATTTCACTCTGGATGCTTAAAGACGATAGGAATTGGTGGCGTGGAGAGCAACGCTAAAAAGAAGAATTGGTTTTGTAGCGTAGTTTGTGGGAAAATGTTCTTGTGTCTAAAAAACATGTTAGGAAAATCGATCAAGGTTGCAAATGATCTAACTTGGACATTGTTTAAGAATGTGAGTAACAGTGATGATGATGGAGATTTTACTTCGGACGAGTTTAGTCAAAATAAGAGTAAGTTGAATGCGATTTTTGGTGTATTGCAAGAGAGTTTCGACCCGATTGTTGATGTTATAACCAAAAGAGAATTGATTGAAGATGTTGTTTTTAGTAGATACTCAGAACATAATCGTTCTAACTTCAGTGGTTTCTATAATGTGATTTTAGAAAAAATGGCTGAAGTGGTTTCTGTGGCAACTATAAGAATTTATGGTCCAAAGGTTGCGGAAATAGTTTTTGTGGCTACCAAAAAACAATATCGAAGACAAGGAATGTGTTGGTTGTTGATGGATGAGCTTGAGAAACACATGACCAACTTAGAAATAAGGAGTTTGATTTTGCATTCCTCTAAAAGTACTATAAACACTTGGACAAAATCATTTGGGTTTGCAATAATGTCGGCTAAGGATAAGTCTCAATTTATTAATCATACACTTCTAGAATTTCAGAATACTATCATGTGTCTTAAATTACTTAATAAATCACTTAATAGACGAATATGA 1824 0.3536 MSLRSEAPDINIEAEYCPEAVIEWYRLTRQKDGKKVVGRMVLSLKAKQHLVFLGWKLWYVDKKCKWELRYTCPTTGKHYITLKNACERCIQDGSCSIKPMKSNKRLRDSKEYDQSSSSSSSDDDSDVSDTITSTSKENEKCSSRCESGSEVTNSMQSDRIGKVLKMSAMENFSEGCNKRGEVMNVSTRKRCTLLYWLIDNRVLASGTSVLCRGGNDIVKKGNIFCDGIVCDCCRDNFTMTAFEAHACCTRRRPSTSICLEDGRSLFECQREALSSCGKEGSHFVGEEKMEKYNDVVCLVCGLGGEIILCDQCPSSFHLGCLGLDRVPDGDWFCPTCCCKICHQPKCKHEECEDEEDNDIIVICVQCEQKFHSGCLKTIGIGGVESNAKKKNWFCSVVCGKMFLCLKNMLGKSIKVANDLTWTLFKNVSNSDDDGDFTSDEFSQNKSKLNAIFGVLQESFDPIVDVITKRELIEDVVFSRYSEHNRSNFSGFYNVILEKMAEVVSVATIRIYGPKVAEIVFVATKKQYRRQGMCWLLMDELEKHMTNLEIRSLILHSSKSTINTWTKSFGFAIMSAKDKSQFINHTLLEFQNTIMCLKLLNKSLNRRI* 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0909 607 PANTHER DUF724 DOMAIN-CONTAINING PROTEIN 4-RELATED 8 601 - -
Psa5g0909 607 Pfam Tify domain binding domain 221 272 IPR032308 -
Psa5g0909 607 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 448 584 IPR016181 -
Psa5g0909 607 SMART PHD_3 338 398 IPR001965 -
Psa5g0909 607 SMART PHD_3 296 337 IPR001965 -
Psa5g0909 607 ProSiteProfiles Zinc finger PHD-type profile. 294 339 IPR019787 -
Psa5g0909 607 MobiDBLite consensus disorder prediction 106 156 - -
Psa5g0909 607 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 8 601 - -
Psa5g0909 607 CDD NAT_SF 494 555 - -
Psa5g0909 607 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 284 359 IPR013083 -
Psa5g0909 607 Pfam PHD-finger 297 338 IPR019787 -
Psa5g0909 607 MobiDBLite consensus disorder prediction 113 138 - -
Psa5g0909 607 Pfam Acetyltransferase (GNAT) family 476 570 IPR000182 GO:0016407
Psa5g0909 607 ProSitePatterns Zinc finger PHD-type signature. 297 336 IPR019786 -
Psa5g0909 607 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 439 592 IPR000182 GO:0016407
Psa5g0909 607 Gene3D - 430 602 - -
Psa5g0909 607 SUPERFAMILY FYVE/PHD zinc finger 286 338 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0909 Psa-Chr5 70062871 70064784 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0909 193 542 PHD Transcription Factor Family AT5G58610 41.408 3.25e-78 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Psa5g0909 Acetyltransf_1 4e-08 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0909 - - cam:101509959 717.613