Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0888 ATGGCTACGGAAGCGCTTAACTCACCCACCACCGCCACTCCTTTCACTCCCTTCGAGGAACCGAATCTCAGCTACCTCGATACACCATGGACGAAAGGTAAACGTTCAAAGCGTTCTCGTATGGATCAATCTTCATGCAGTGAAGAAGAGTATCTCGCTTTCTGTCTCATCATGCTCGCTCGCAGCGGCAACAACAACAGCAACAACAGCAACAACTCCACCGCGAAACAGATTTTATCTGACACTGAATCGGCGCCGCTAACAACCGTTAAACTCAGTCACAAATGCTCCGTTTGCAACAAAGCTTTCTCATCTTACCAAGCACTCGGCGGACACAAAGCCAGCCACCGGAAACTCGCGCTTATGTCCACTGCCGAAGATCAGAATCAGACCACCACCACCTCATCCGCCGTGACTACTAGCTCTGCATCCAATAAGATCAAGACTCACGATTGTTCCATATGTCACAAATCCTTCCCTACCGGACAGGCTTTGGGAGGACACAAGCGTTGCCACTACGAAGGCGGTGCCGGTGGCGGAGCCGGAAGTAGCGCCGTAACGGCCTCGGAAGGAGTTGGATCCTCTCACAGCCAACACCGTGACTTTGATCTTAACCTCCCGGCTTTTCCGGACTTTTCAAAGAAGTGTTTCGTGGATGACGAGGTTTCCAGCCCTCTTCCTGCAGCAAAGAAGCCCTTTCTTTTCAAGATTGAAATTCCTCATTACTGA 729 0.5089 MATEALNSPTTATPFTPFEEPNLSYLDTPWTKGKRSKRSRMDQSSCSEEEYLAFCLIMLARSGNNNSNNSNNSTAKQILSDTESAPLTTVKLSHKCSVCNKAFSSYQALGGHKASHRKLALMSTAEDQNQTTTTSSAVTTSSASNKIKTHDCSICHKSFPTGQALGGHKRCHYEGGAGGGAGSSAVTASEGVGSSHSQHRDFDLNLPAFPDFSKKCFVDDEVSSPLPAAKKPFLFKIEIPHY* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0888 242 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 233 IPR044653 GO:0003700
Psa5g0888 242 PANTHER ZINC FINGER PROTEIN ZAT10 1 233 - -
Psa5g0888 242 ProSiteProfiles Zinc finger C2H2 type domain profile. 150 172 IPR013087 -
Psa5g0888 242 Gene3D Classic Zinc Finger 92 172 - -
Psa5g0888 242 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
Psa5g0888 242 SUPERFAMILY beta-beta-alpha zinc fingers 94 172 IPR036236 -
Psa5g0888 242 Pfam C2H2-type zinc finger 94 118 - -
Psa5g0888 242 Pfam C2H2-type zinc finger 150 173 - -
Psa5g0888 242 SMART c2h2final6 150 172 IPR013087 -
Psa5g0888 242 SMART c2h2final6 94 116 IPR013087 -
Psa5g0888 242 ProSitePatterns Zinc finger C2H2 type domain signature. 152 172 IPR013087 -
Psa5g0888 242 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 116 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0888 Psa-Chr5 69212228 69214832 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0888 1 239 C2H2 Transcription Factor Family AT1G27730 48.571 1.70e-62 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa5g0888 zf-C2H2_6 1.6e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0888 - - gmx:100776038 296.589
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0888 5 69212228 69214832 Psa5g0888 5 69212228 69214832 ECH