Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0882 ATGGACAACGCCTTTGCTAAATCTATTCCCGAGGTCCTTGACTTCTTTCGAGTGGACCCAACAAAGGGTTTATCCGACACTCAGGTTGTACAACATGGCAGACTTTATGGTACAAACGTGCTGCATGAAGATCAAAGAGCTCCGTTTTGGAAATTGGTTTTGAAGCAGTTTGATGATTTGCTCGTGAAGATACTAATTGCAGCTGCTCTTATATCATTTATTCTGGCATTAATTAATGGTGAAACAGGATTGATGGCGTTTCTGGAACCTTCTGTTATTCTGATGATATTGGCTGCAAATGCAGCTGTGGGAGTGATCACAGAAACAAATGCCGAAAAAGCTCTTGAGGAACTACGTGCTTATCAAGCTGATGTGGCAACTGTCTTGCGAAGTGGTTGTTTTTCCATACTTCCTGCAACTGAACTTGTTCCTGGAGATATTGTGGAAGTTTCCGTGGGGTGCAAAATTCCTGCTGATATGAAGATGATTGAATTGCTAAGTAATGAAGTACGCGTTGATCAAGCTATTCTTACAGGTGAGAGCAGCTCGGTCGAAAAAGAGCTTAAAACTACAACAGCAGCAAATGCAGTATACCAGGACAAAACAAATATTCTTTTCTCGGGAACAGTTGTGGTTGCTGGTAGGGCAAGAGCTATTGTGGTGGGAGTTGGTCCTAACACTGCCATGGGCAGCATACGTGATTCAATGTTGCGAACAGAGGATGAGGTGACACCGTTGAAAAAGAAGCTGGATGAGTTTGGCACTTTTTTGGCCAAGGTTATTGCAGGGATATGCGTGTTGGTTTGGATTGTAAATATTGGTCACTTTCGTGACCCTTCTCATGGTGGTTTTGTGCATGGCGCAATTCATTATTTTAAGATTGCAGTTGCTCTGGCCGTTGCAGCAATTCCTGAAGGTCTCCCTGCTGTTGTAACGACGTGTTTGGCTCTTGGAACAAAGCGAATGGCTAGGTTGAATGCCATTGTTCGCTCTTTGCCGTCCGTAGAGACCTTGGGTTGCACCACTGTAATTTGCAGTGACAAAACTGGGACTCTAACTACCAATATGATGTCAGTTGCAAAGATATGTATTGTCGAGTCTGCAAAAAGTAGTCCTTTTGTTACGGAATACAGTGTCAGTGGAACAACATATGCACCTGAAGGTATAATCTTTGACAAGGCAGGGGTACAGCTTGACATTCCAGCTCAATCGCAATGTCTACTTCACATGGCTATGTGTTCTGCTCTTTGCAATGAGTCAACCCTGCAGTATAATCCTGATAAAGGGATGTATGAAAAAATTGGTGAGTCAACTGAAGTGGCACTACGTGTTTTGGTAGAAAAGGTCGGTCTCCCTGGTTTTAATTCTATGCCGTCAGCATTGAATATGTTGAGCAAGCATGAGCGGGCTTCTTACTGTAACCATTATTGGGAGGAACAATTTAGAAAGTTAGATATTTTGGAATTTTCTAGAGATCGGAAAATGATGAGTGTCCTTTGCAGCCGGAACCAGTTACATGTTTTATTTTCAAAAGGTGCTCCAGAAAGTATAATCTCTAAATGTACAACCATTCTATGCAATGGTGATGGTTCTGTCATGCCACTTACTGCTGATATTCGATCAGAGCTGGACTCAATGTTCAACAGTTTTGCAGGAAAAGAAACATTGAGATGCCTAGCTTTGGCTCTCAAATGGATGCCTTCAGATCAACAGACGGTGTCCTTTGATGATGAGAAGGACCTCACGTTTATTGGATTGGTTGGGATGCTGGATCCACCAAGAGATGAAGTAAGGAATGCCATGCTTTCATGTATGACTGCTGGCATACGCGTTATAGTTGTCACTGGAGATAACAAGTCCACCGCCGAGTCACTTTGCCGCAAGATAGGTGCTTTTGACCATTTGATAGATTTTACTGAACATTCTTACACTGCTTCTGAGTTTGAAGAACTTCCAGCACTGCAACAAACTATAGCATTGCAGCGTATGTCACTTTTTACAAGGGTTGAGCCTTCTCATAAAAGGATGCTGGTTGAAGCATTGCAGCACCAAAATGAAGTGGTTGCAATGACTGGTGATGGAGTCAATGATGCACCTGCCCTGAAGAAGGCAGATATAGGAATTGCTATGGGATCAGGGACTGCTGTTGCTAAGAGTGCTTCAGACATGGTCCTGGCTGATGATAATTTTGCCTCAATTGTTGCGGCCGTGGCAGAGGGAAGGGCTATATACAATAATACAAAGCAATTTATTAGATACATGATTTCTTCCAACATTGGTGAAGTAGTATGTATATTTGTGGCTGCAGTGCTTGGAATACCTGATACCCTGGCCCCTGTCCAGTTGCTTTGGGTCAATTTGGTCACTGATGGATTGCCTGCCACTGCTATTGGCTTCAATAAGCAAGACTCTGATGTGATGAAGGTTAAACCTCGAAAGGTACTCTACTAA 2451 0.43 MDNAFAKSIPEVLDFFRVDPTKGLSDTQVVQHGRLYGTNVLHEDQRAPFWKLVLKQFDDLLVKILIAAALISFILALINGETGLMAFLEPSVILMILAANAAVGVITETNAEKALEELRAYQADVATVLRSGCFSILPATELVPGDIVEVSVGCKIPADMKMIELLSNEVRVDQAILTGESSSVEKELKTTTAANAVYQDKTNILFSGTVVVAGRARAIVVGVGPNTAMGSIRDSMLRTEDEVTPLKKKLDEFGTFLAKVIAGICVLVWIVNIGHFRDPSHGGFVHGAIHYFKIAVALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVAKICIVESAKSSPFVTEYSVSGTTYAPEGIIFDKAGVQLDIPAQSQCLLHMAMCSALCNESTLQYNPDKGMYEKIGESTEVALRVLVEKVGLPGFNSMPSALNMLSKHERASYCNHYWEEQFRKLDILEFSRDRKMMSVLCSRNQLHVLFSKGAPESIISKCTTILCNGDGSVMPLTADIRSELDSMFNSFAGKETLRCLALALKWMPSDQQTVSFDDEKDLTFIGLVGMLDPPRDEVRNAMLSCMTAGIRVIVVTGDNKSTAESLCRKIGAFDHLIDFTEHSYTASEFEELPALQQTIALQRMSLFTRVEPSHKRMLVEALQHQNEVVAMTGDGVNDAPALKKADIGIAMGSGTAVAKSASDMVLADDNFASIVAAVAEGRAIYNNTKQFIRYMISSNIGEVVCIFVAAVLGIPDTLAPVQLLWVNLVTDGLPATAIGFNKQDSDVMKVKPRKVLY* 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0882 816 TIGRFAM ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type 53 813 IPR005782 GO:0005388|GO:0006816|GO:0016021
Psa5g0882 816 SUPERFAMILY Calcium ATPase, transmembrane domain M 3 813 IPR023298 -
Psa5g0882 816 Pfam E1-E2 ATPase 122 324 - -
Psa5g0882 816 PANTHER SARCOPLASMIC/ENDOPLASMIC RETICULUM CALCIUM ATPASE 3 4 813 - -
Psa5g0882 816 Pfam Cation transporting ATPase, C-terminus 775 813 IPR006068 -
Psa5g0882 816 Gene3D - 22 237 - -
Psa5g0882 816 SFLD Haloacid Dehalogenase 326 743 - -
Psa5g0882 816 Pfam Cation transporter/ATPase, N-terminus 7 72 IPR004014 -
Psa5g0882 816 PANTHER CALCIUM-TRANSPORTING ATPASE 4 813 - -
Psa5g0882 816 PRINTS P-type cation-transporting ATPase superfamily signature 173 187 - -
Psa5g0882 816 PRINTS P-type cation-transporting ATPase superfamily signature 345 359 - -
Psa5g0882 816 PRINTS P-type cation-transporting ATPase superfamily signature 585 596 - -
Psa5g0882 816 PRINTS P-type cation-transporting ATPase superfamily signature 607 617 - -
Psa5g0882 816 PRINTS P-type cation-transporting ATPase superfamily signature 691 710 - -
Psa5g0882 816 PRINTS P-type cation-transporting ATPase superfamily signature 714 726 - -
Psa5g0882 816 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 661 776 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Psa5g0882 816 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 92 371 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Psa5g0882 816 Gene3D - 55 813 - -
Psa5g0882 816 SMART Cation_ATPase_N_a_2 3 77 IPR004014 -
Psa5g0882 816 SUPERFAMILY HAD-like 578 739 IPR036412 -
Psa5g0882 816 Gene3D - 342 735 IPR023214 -
Psa5g0882 816 Gene3D - 355 592 IPR023299 GO:0000166
Psa5g0882 816 Pfam haloacid dehalogenase-like hydrolase 582 705 - -
Psa5g0882 816 ProSitePatterns E1-E2 ATPases phosphorylation site. 347 353 IPR018303 -
Psa5g0882 816 SUPERFAMILY Calcium ATPase, transduction domain A 124 235 IPR008250 -
Psa5g0882 816 SFLD p-type atpase 326 743 IPR044492 -
Psa5g0882 816 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 352 589 IPR023299 GO:0000166
Psa5g0882 816 Pfam Cation transport ATPase (P-type) 415 524 - -
Psa5g0882 816 PRINTS Sodium/potassium-transporting ATPase signature 118 138 - -
Psa5g0882 816 PRINTS Sodium/potassium-transporting ATPase signature 338 359 - -
Psa5g0882 816 PRINTS Sodium/potassium-transporting ATPase signature 762 783 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0882 Psa-Chr5 68405132 68428257 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0882 1 814 Primary Pumps ATPases(2) AT1G10130 83.661 0.0 1402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0882 K05853 - gmx:100783509 1469.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0882 5 68405132 68428257 Psa5g0882 5 68405132 68428257 ECH