Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0877 ATGATCAACATTCCAAACCTTAAAATCCCCGAATGGGACACGACACAATACGAGGGAGGAGCATTCTTAAACCATTTCATTTCAAACGACTCCGACACACAATTTTCCATTACCGAAGATTTCGACTTACCTCTTCATGTTTTCTCTACCGACCATTTCCGAATGTTCGAATTCAAAGTGAGGAAATGCCAGCGTGGCAGGTCTCATGACTGGACGGAATGTCCTTACTCTCATCCCGGCGAGAAAGCTCGCCGGAGAGACCCTAGGAAGTTTAATTACTCCGGTACACCTTGCTCGGAGTTTCGCAGATCAGGAAACTGTACTAAAGGTGATTCATGTTACTTTGCGCATGGTGTTTTCGAATGCTGGCTTCATCCTTCTCGTTACAGGACACAGCTTTGTAACGATGGAACTGCTTGTCGCCGGCGAGTGTGTTTCTTTGCTCACACCATTGATCAACTTCGTCTCTCGGGTAAGGCTTCACCGGAATCATTTGTTTCATCTCCTACTTCGGTTCTTGAATCTCCTCCGGGAAACTCCCGATACGGCGACGTTCCGGTGAATATGCGGGAACTAGTTGACTGCATGAGAGATGTTCGAATTGCGGATTCGGGTCGGGTCGGGTGTCCGCAGGGTGGGTTTTTTAGTCTTCCGGCAAGCTATGAAGGGGTTAGTATGGAGAGGGTGGAATCTGGAAGAGATCTTAGAGCCAAAATCTATGGAAAATTCAGTAAGGTGAACTTCAACGACGGTGTTGTTTCGGTTCCTGTTCCTGATTTTGGATGGGTTTCGGAACTGGTTAACTGA 807 0.4721 MINIPNLKIPEWDTTQYEGGAFLNHFISNDSDTQFSITEDFDLPLHVFSTDHFRMFEFKVRKCQRGRSHDWTECPYSHPGEKARRRDPRKFNYSGTPCSEFRRSGNCTKGDSCYFAHGVFECWLHPSRYRTQLCNDGTACRRRVCFFAHTIDQLRLSGKASPESFVSSPTSVLESPPGNSRYGDVPVNMRELVDCMRDVRIADSGRVGCPQGGFFSLPASYEGVSMERVESGRDLRAKIYGKFSKVNFNDGVVSVPVPDFGWVSELVN* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0877 268 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 118 IPR000571 GO:0046872
Psa5g0877 268 Gene3D - 89 161 - -
Psa5g0877 268 ProSiteProfiles Zinc finger C3H1-type profile. 92 120 IPR000571 GO:0046872
Psa5g0877 268 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 28 268 - -
Psa5g0877 268 SUPERFAMILY CCCH zinc finger 92 122 IPR036855 GO:0046872
Psa5g0877 268 SMART c3hfinal6 128 151 IPR000571 GO:0046872
Psa5g0877 268 SMART c3hfinal6 92 119 IPR000571 GO:0046872
Psa5g0877 268 Pfam RNA-binding, Nab2-type zinc finger 134 149 - -
Psa5g0877 268 PANTHER UNKEMPT FAMILY MEMBER 28 268 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0877 Psa-Chr5 68285848 68288169 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0877 42 179 C2H2 Transcription Factor Family AT5G12850 56.667 1.69e-51 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Psa5g0877 zf-CCCH 2e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0877 - K23048 mtr:MTR_3g103960 444.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0877 5 68285848 68288169 Psa5g0877 5 68285848 68288169 ECH