Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0868 ATGGAGAGAGATAAACTACCTTGGTTGCAACCTCCAACCGAAGAAGAGCGGCACACAACTAGCGTCATCAACAACAATGGCGATGGTTTCATAACTGATGATGAAAGTCTTTCTTCTTTCAGATCAATGCTGGAAATTGAGTGGTACATGAACAATATGCCAACTCATGATGAACAAGTTATCCCAAATTTTCAAATTGAAACAAAACATCAACACAACTTTGTTTCTCCTTCAGATCCAAACAGTTCTGTTGGTATGCAACCTTTGGGTTCCACCTCTTTTTCACCACCATCCAACTTCAATTTCTCTCATCTACTTAATACTGAAGACAATATCAACAACATCATCAACACCCCCACTACCAACAACAATAATCCATTTGGAAGTGTCTTAAGTCTCGAAACCCAGAGTAGCTTCCTAACTCCATTTCAAGGGAATCAGACAGACTTACCAACCCAAACTGGCCATTTATGTAAGTTCCCGGAAACGAATGTTGTTGGATTTATACCAATGGGTTTACAAGAAGAAATTTCATTTGATGGTGGTTCAGGGCCTTCAAGTTCCATGTTTTTGAGTAATGACAAAGCCTTTCGGCCTGTAGACACTCCTTCACTTGTTCTTGCATCGCCTAATTTATTGAACAATAAGGATATGAGTTCTAACATTAGCGATGCAGACAAGTTGGGATCGCTGTCGATTCCACACTTTACATCGACATGCTTGAATGACTTTGATCAGAAGACGGAGAAAGAGGTAAACGGGGAGATTGATGAAGGATTAAATTTCCAGTTTAAAGAGGGTGTTGGTATTGATGGTAATCAGGGTGGCAATGATGATGAAGACGCAAATGGTGTTGGTGAGGTGGATCGAAAAGGAAAGAAGAAGGAAAATCCATCAAAGAGTCTCTTGGCTGAGAAGAGGAGAAGGAAGAAGCTCGGCGATAAGATGTACACTCTTCGTTCTATTGTGCCAATTATCAGCAAGATGGATAAAGCTTCAATACTTGGAGATGCTGTTGAATACATGAATGAGTTACGACAAAAAGTTAATGATCTTCAAACTGAGCTAGAGTTAATTTCTATTGAACCATCTCTGGTACCCACCACTTCAACCCTTCCTATACAAGTGAATGAAGAATTATGTCATAGCAATGTGCCAAGCCCTGGAAACCAATCAACAAAGGTAGAGGCATGGGAAATGGAAGATGGAACTGTCAACATCCGTATATCTTGTATCTACAAACCAGCTATTTTGGTTTCAATAATGAAGGCATTTGATATCCTTGGATTGGACATTCACCAAGCTACCATAAGTTGTTTCAATGGTTTTGCCATAGATGTATACAAAGTTGAGCAATGCATACAAGGTCAGAAAGTGAACTCTGATCTAATTAAAGCAGTGTTATTGAATGCAGTGGATTACCATATTGCATTATGTGAGTGA 1443 0.3943 MERDKLPWLQPPTEEERHTTSVINNNGDGFITDDESLSSFRSMLEIEWYMNNMPTHDEQVIPNFQIETKHQHNFVSPSDPNSSVGMQPLGSTSFSPPSNFNFSHLLNTEDNINNIINTPTTNNNNPFGSVLSLETQSSFLTPFQGNQTDLPTQTGHLCKFPETNVVGFIPMGLQEEISFDGGSGPSSSMFLSNDKAFRPVDTPSLVLASPNLLNNKDMSSNISDADKLGSLSIPHFTSTCLNDFDQKTEKEVNGEIDEGLNFQFKEGVGIDGNQGGNDDEDANGVGEVDRKGKKKENPSKSLLAEKRRRKKLGDKMYTLRSIVPIISKMDKASILGDAVEYMNELRQKVNDLQTELELISIEPSLVPTTSTLPIQVNEELCHSNVPSPGNQSTKVEAWEMEDGTVNIRISCIYKPAILVSIMKAFDILGLDIHQATISCFNGFAIDVYKVEQCIQGQKVNSDLIKAVLLNAVDYHIALCE* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0868 480 PANTHER BHLH TRANSCRIPTIONAL FACTOR 64 476 - -
Psa5g0868 480 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 293 363 IPR036638 GO:0046983
Psa5g0868 480 MobiDBLite consensus disorder prediction 272 307 - -
Psa5g0868 480 CDD bHLH_AtAMS_like 299 357 - -
Psa5g0868 480 Pfam Helix-loop-helix DNA-binding domain 304 345 IPR011598 GO:0046983
Psa5g0868 480 Coils Coil 335 362 - -
Psa5g0868 480 SMART finulus 302 351 IPR011598 GO:0046983
Psa5g0868 480 CDD ACT_UUR-ACR-like 409 467 - -
Psa5g0868 480 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 64 476 - -
Psa5g0868 480 MobiDBLite consensus disorder prediction 283 307 - -
Psa5g0868 480 Gene3D - 287 360 IPR036638 GO:0046983
Psa5g0868 480 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 296 345 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0868 Psa-Chr5 67972797 67981818 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0868 38 457 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 33.913 1.00e-57 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa5g0868 HLH 3.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0868 - - cam:101515675 302.753