Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0860 ATGAACAGTAGAATGAATTTCAAGATGGATTCTTCTGATAAAGCCAAACTCTTCGTTGGTGGCATTTCTCGAGACACTACTGAAGATATTCTCAAACACTATTTCGCTAAATACGGCGACGTTTTGTATTCCACCATCTCTTTCGACCGCGCTACTCGAATCCCTAGAGGTTTCGGATTCGTTACGTTCGCCGATATCGTTTCAGCTGAAAAAGCGCTTCAAGACACCCATGCTATTCTTGGAAGAAAGGTAGAGGTGAGAAAAGCTATACCAAGAAGTGAACAGTTACAGCAAAATCAATTACAGAGTAGAGGGGGGAGTGGCTATGGTAATTATGAATGTAACAGTGATCAGATTAGGACTAAGAAGATTTTTGTTGGAGGTTTACCTGCTAATATATCTGTGGAGGAGTTTAAGAGATACTTTGAGGGGTTTGGTACGATAACTGATGTGGTGGTTATGCAGGATAGTGTAACTCATAGGCCGAGGGGGTTTGGGTTTATCACTTTTGAGTCGGAAGAATCAGTGCGAAGTGTTACGGTGAAAAGTTTTCATGACTTGAATGGTAGGCTGGTGGAGGTTAAGAGGGCTGTTCCGAGGGAGGGGAACGTTGGTAACGATCGTTTTAGCGGTAAAATAAGGTATAAGATTGATAGAGGAGCTGCTGAGATGTTTCCTCATTCTAGTCCTGGCAACATGCTTCCTGGATTTTCTCCTTTACCTTGGTATCCTAGTGATGTGGGATATGGGTATGGATCAAATGCTGCCTATGGGTGCTGGTATCCTATGGGTGGGTATGGGGGGAACGGATATGTAGCTCCGTCTGATGTTTATCGGAACTTCTGGTACGGGCAAATGGTAACTGGTCATCAGGCGCCACCTTATGTTAATGCTATGCCTAGTATTGCGTATATGGGTGGTTGTGTTGGAATAGTTGGCAGTGGTGCTGAAAATTGGGGCTACAATGCCGTTCTTGAGTCCACAACTAATTATAAATTTGGCCAACCGTTAATCGCCAATGGATTTGTTCCATGCAATGTGCCATCGCTTCATGGTGTAAAGCAAGGTGTTGGCGCTTCAAGTTTTAAACAAAGCAATGGTGAAATTTCTAGCTGA 1116 0.4355 MNSRMNFKMDSSDKAKLFVGGISRDTTEDILKHYFAKYGDVLYSTISFDRATRIPRGFGFVTFADIVSAEKALQDTHAILGRKVEVRKAIPRSEQLQQNQLQSRGGSGYGNYECNSDQIRTKKIFVGGLPANISVEEFKRYFEGFGTITDVVVMQDSVTHRPRGFGFITFESEESVRSVTVKSFHDLNGRLVEVKRAVPREGNVGNDRFSGKIRYKIDRGAAEMFPHSSPGNMLPGFSPLPWYPSDVGYGYGSNAAYGCWYPMGGYGGNGYVAPSDVYRNFWYGQMVTGHQAPPYVNAMPSIAYMGGCVGIVGSGAENWGYNAVLESTTNYKFGQPLIANGFVPCNVPSLHGVKQGVGASSFKQSNGEISS* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0860 371 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 9 364 - -
Psa5g0860 371 Gene3D - 120 208 IPR012677 -
Psa5g0860 371 SUPERFAMILY RNA-binding domain, RBD 98 208 IPR035979 GO:0003676
Psa5g0860 371 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 91 IPR000504 GO:0003723
Psa5g0860 371 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 9 364 - -
Psa5g0860 371 SUPERFAMILY RNA-binding domain, RBD 6 112 IPR035979 GO:0003676
Psa5g0860 371 SMART rrm1_1 123 195 IPR000504 GO:0003723
Psa5g0860 371 SMART rrm1_1 16 87 IPR000504 GO:0003723
Psa5g0860 371 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 78 IPR000504 GO:0003723
Psa5g0860 371 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 178 IPR000504 GO:0003723
Psa5g0860 371 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 122 199 IPR000504 GO:0003723
Psa5g0860 371 Gene3D - 2 119 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0860 Psa-Chr5 67538835 67540837 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0860 17 274 Eukaryotic Initiation Factors Gene Family AT4G34110 26.667 1.73e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0860 K14411 - gmx:100816822 487.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0860 5 67538835 67540837 Psa5g0860 5 67538835 67540837 ECH