Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0852 ATGTTGCAAGGAATAAAAATTGCAGAAAGGCAAGATGCCTCAACTACTACTCTTCATGCCAACAAGATGAATGGCCCAGAAACAGTTAGAAAGAGATCAAAACTGATGCTTCCACCACCCCAGAGTTCTTACCAAGAATTGGATGAAATTGCCAAGTTGGGTTATGCTAGTGACCTTATGAGCAGCGAAGAACTCACTGAAGGCAGCAGCGCTACGCGTTTGGAGATGCATGACAGTGCTAAACTTGAGCTACATAGACAAGCTGATATGAACATAAGTTTGCGCTCTGGTTTAAGTAGCCTTCCACAGCCCAAAAATGAGTACCAAATAGTGATGCAACCTATTAAGAAGATGATGAAAATAACAAATGTGAGCGAGTATAAAGAAATTACAAAGGAAAAGTTGCCAAAGATGATTTATGACTACTTTGCATCAGGGGCAGAGGATCAGTGGACTTTGAAAGAGAACCGGAATGCATTCTCAAGGATTATGTTTAGGCCACGTGTTCTAATCGATGTAAGCAAGATAGATATGACAACAACTGTTTTAGGATTCAAAATATCAAAGCCTATCATGATTTCTCCTACGTCCATGCATAAGATGGCTTACCCTGAAGGAGAATACGCTACTGCTAGAGCAGCATCAGCAGCTGGCACCATCATGACACTATCCACAGCGGTTTCTTCTAGTGTTGAGGAGGTTGCTTCAACAGGACCTGGTATCCGTTTCATCCAACTCTATGTGTTTAAGGACAGAAATATAGTTACTCAGCTAGTGAGAGGAGCTGAAAATGCTGGTTTCAAGGCAATTGTCCTTATTGTAGACACTGCAGTGGGTGGTCATAGAGAGGCTAACATAAAAAACAGATTTACATTTCCACCACACTTGAGATTTAAGACTTATGAAGCCATGGTTCCTGAAAGGATTAAAGACTCTAATCCGGTCTCCATTGTTAAAGGCCTATATGACCAATCACTTAACTGGAAGGATGTAAAATGGCTTCAAACAATAACCTCATTGCCAATAATACTAAAGGGCGTACTTACTGCTGAGGATCAGGCATCGCAGTTAAATGGTGCTCTTAAGGAGT 1090 0.4119 MLQGIKIAERQDASTTTLHANKMNGPETVRKRSKLMLPPPQSSYQELDEIAKLGYASDLMSSEELTEGSSATRLEMHDSAKLELHRQADMNISLRSGLSSLPQPKNEYQIVMQPIKKMMKITNVSEYKEITKEKLPKMIYDYFASGAEDQWTLKENRNAFSRIMFRPRVLIDVSKIDMTTTVLGFKISKPIMISPTSMHKMAYPEGEYATARAASAAGTIMTLSTAVSSSVEEVASTGPGIRFIQLYVFKDRNIVTQLVRGAENAGFKAIVLIVDTAVGGHREANIKNRFTFPPHLRFKTYEAMVPERIKDSNPVSIVKGLYDQSLNWKDVKWLQTITSLPIILKGVLTAEDQASQLNGALKE 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0852 363 CDD alpha_hydroxyacid_oxid_FMN 125 352 IPR012133 GO:0010181|GO:0016491
Psa5g0852 363 MobiDBLite consensus disorder prediction 9 23 - -
Psa5g0852 363 PANTHER S -2-HYDROXY-ACID OXIDASE-RELATED 119 354 - -
Psa5g0852 363 MobiDBLite consensus disorder prediction 1 42 - -
Psa5g0852 363 Pfam pre-mRNA splicing factor component 74 114 IPR021786 -
Psa5g0852 363 SUPERFAMILY FMN-linked oxidoreductases 120 354 - -
Psa5g0852 363 Gene3D Aldolase class I 118 358 IPR013785 -
Psa5g0852 363 PANTHER ALPHA-HYDROXY ACID DEHYDROGENASE, FMN-DEPENDENT, ALDOLASE-TYPE TIM BARREL-RELATED 119 354 - -
Psa5g0852 363 ProSiteProfiles FMN-dependent alpha-hydroxy acid dehydrogenase domain profile. 116 363 IPR037396 -
Psa5g0852 363 Pfam FMN-dependent dehydrogenase 132 353 IPR000262 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0852 Psa-Chr5 66721406 66722584 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0852 6 73 MYB-Related Transcription Factor Family AT1G09770 72.464 2.32e-23 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0852 K11517 - tcc:18596481 330.872