Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0847 ATGAAGGGAATTTTGGTGAAAGAAGAAGAAACATTACCATATACAAATGTTGGTTCATCATCAAGTTCATCTTCTTCTTCCAATTCAAGTCTTCAACCAAAACCAATGGAAGGGTTACACGAAACAGGTCCACCTCCATTTCTCACCAAAACCTTTGATGTCGTTGAAGATCCTTCCACCGATGGAATCGTTTCGTGGAGCAGAGCTCGTAATAGCTTCGTCGTCTGGGACCTCAGTAAATTCTCCACTGCAATTTTACCTCGTTACTTCAAACATAGCAATTTCTCTAGCTTCGTTCGTCAACTCAATACCTATGGTTTTAGAAAAGTTGATCCGGATCGATGGGAATTTGCGAATGAAGGGTTTTTAGCTGGACAGAGGAACTTGTTAAGAACGATTAAGAGAAGAAGAAATGTAGCACAGTCGCCGTCTATGCAACGAGAAAGTGGTGGTGCTTGTATTGAATTAGGAGAGTTTGGTCTTGAAGGTGAGATTGAGAGGTTGAGAAGAGACAGATCTGTTTTAGTGGCTGAAATTGTGAAATTGAGGCAGCAGCAGAATAATTCAAGGGATCAAATATCTGCTATGGAAGCTAGGTTGTTGATTACTGAGAAGAAACATCAACAGATGATGGCTTTTCTTGCAAGAGCACTCAGTAATCAATCTTTTATTCAGCAATTGGCAAACAACAAAGAGTTGAAAGGTGTTGAAATGAAGCGAAAGAGGAGGCTCCCTGCTAGTTCAAGTTTGGAGAATTTGCAGAATGATTCCGTGACGATGATGACAGTGCCAATTGAATCTGTGGTGGATTATTCTAGTCGAGAACAACAAGAGGGTTTGACTGCTATTGAGTCTGAGATAGAGACATTGTTAAGTGCTTATGATAATGAATCAAGGAGTGAAATCAAAGATCCGAGTGCTAACGAGAGTAATTTGAGTGATTGGGAGGAATTACTGAACCAAAAGTTGGTTGGTGGGAATCCAGAGGATGAGGTTTTGATTGGTGATTTCTCACAAATTGATGCGCCGGTTGAGGATTTGGTAGAAAAGAATGATGATTGGACTGTGGATTTGCAGAACCTTGTTGATGAAATGGATTTTGAACCTTAA 1110 0.4027 MKGILVKEEETLPYTNVGSSSSSSSSSNSSLQPKPMEGLHETGPPPFLTKTFDVVEDPSTDGIVSWSRARNSFVVWDLSKFSTAILPRYFKHSNFSSFVRQLNTYGFRKVDPDRWEFANEGFLAGQRNLLRTIKRRRNVAQSPSMQRESGGACIELGEFGLEGEIERLRRDRSVLVAEIVKLRQQQNNSRDQISAMEARLLITEKKHQQMMAFLARALSNQSFIQQLANNKELKGVEMKRKRRLPASSSLENLQNDSVTMMTVPIESVVDYSSREQQEGLTAIESEIETLLSAYDNESRSEIKDPSANESNLSDWEELLNQKLVGGNPEDEVLIGDFSQIDAPVEDLVEKNDDWTVDLQNLVDEMDFEP* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0847 369 ProSitePatterns HSF-type DNA-binding domain signature. 86 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa5g0847 369 SUPERFAMILY "Winged helix" DNA-binding domain 43 136 IPR036390 -
Psa5g0847 369 Gene3D - 39 137 IPR036388 -
Psa5g0847 369 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 17 323 IPR027725 -
Psa5g0847 369 SMART hsfneu3 43 136 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa5g0847 369 Coils Coil 165 199 - -
Psa5g0847 369 MobiDBLite consensus disorder prediction 1 38 - -
Psa5g0847 369 Coils Coil 344 364 - -
Psa5g0847 369 Pfam HSF-type DNA-binding 47 136 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa5g0847 369 MobiDBLite consensus disorder prediction 13 35 - -
Psa5g0847 369 PRINTS Heat shock factor (HSF) domain signature 47 70 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa5g0847 369 PRINTS Heat shock factor (HSF) domain signature 85 97 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa5g0847 369 PRINTS Heat shock factor (HSF) domain signature 98 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa5g0847 369 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 17 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0847 Psa-Chr5 66602471 66605249 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0847 33 367 HSF AT2G26150 51.304 1.47e-116 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Psa5g0847 HSF_DNA-bind 5.6e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0847 K09419 - gmx:100794605 432.95