Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0844 ATGCCGCCGTTAATCGGACTCAAAAAACACGACAAAGATGAACATGTGAAGGAGGGTGTCAAGAGTAAGAAATGGAGGTTATGGAGAAGTTCATCTGGTGATAACGGTTCCTGGAAAGGCTTTAAAGGTAACAACCATCACAAAGCAGTTTCTGAAGGTTCTGAATCTCCAACTGCAGCAGAAGCTTACACCGCCGCAGTAGCCACCGTTGTTAGAGCTCAACCTAAGGATTTTAGACTCGTTAGGCAAGAATGGGCTGCTATAAGAATTCAAACTACCTTCCGCGCCTTCTTGGCAAGGAGGGCTTTGAGGGCTTTGAAGGCGGTGGTGAGGATTCAAGCACTAGTTAGGGGTAGGCAAGTGAGGAAGCAAGCTGCAGTGACATTGAGGTGCATGCAGGCGTTGGTTCGTGTTCAGGCTCGAGTGAGGGCTCGTCGAGTGAGGATGTCGATGGAGGGACAAGCCGTGCAGAATATGCTCAATGAGCGGCGGACAAAGCTTGAACTTTTGAAGGATGCTGAGGAAGGGTGGTGTGATAGTATTGGAACATTGGAAGATGTGAAATCGAAGATTCAAATGAGGCAAGAAGGAGCTTTCAAAAGAGAGAGAGCACTTGCATACTCTCTTGCTCAGAAGCAATGCAGGCCAACTTCAAGCTCTAATTCACAAACAACCGCCTCGTTTTCCTCTCTCAAGAATCCCGAGATGAACAAAGCTAACGGGGGATGGAGTTGGTTGGAAAGATGGATGGCAGCCAAGCCTTGGGAGACAAGATTGATGGAACAATCCCATGCTGAAAGCTTAGATAAAACACCTCCACCGCCTCCGAAGAAATTCGCGGATCCCTTTGTAAGCTCTAATTCAAAACCATGCTCGGTCAATATCAAGAAGAACAATGTTACAACAAGGATTTCCGCGAAGCCTCCTCCCCACATCGGACAAGCTACTCGTTCGTCTTCAAGTCCAAGTTCCGAGTTTCGGTATGATGAAAGTTCTGCATCGTCTTCTATTTGTACATCCGCAACACCAATGTCAGGGAACACTTACGAAAGGACTGAGGATAGTGGTAACAACACTAGGCCAAATTACATGAACCTAACGCAATCAACCAAGGCGAAGCTGAAATCGGGCAATAATCCAATGTATAGCAGAGCTCAAAGGCAACAGTCAATGGACGAGTTTCAGTTTATGAGGAGGGCTGCAGGTTTCTCTAATGGAGATTCTAGAAGTATAGCTGCTTCTGACCATTCACTCAACTTTTCTAGGCCACTTCATCTACCAACTTCCATGGATAAAAGCTCGGTGAGGCCGCGGTGA 1317 0.4692 MPPLIGLKKHDKDEHVKEGVKSKKWRLWRSSSGDNGSWKGFKGNNHHKAVSEGSESPTAAEAYTAAVATVVRAQPKDFRLVRQEWAAIRIQTTFRAFLARRALRALKAVVRIQALVRGRQVRKQAAVTLRCMQALVRVQARVRARRVRMSMEGQAVQNMLNERRTKLELLKDAEEGWCDSIGTLEDVKSKIQMRQEGAFKRERALAYSLAQKQCRPTSSSNSQTTASFSSLKNPEMNKANGGWSWLERWMAAKPWETRLMEQSHAESLDKTPPPPPKKFADPFVSSNSKPCSVNIKKNNVTTRISAKPPPHIGQATRSSSSPSSEFRYDESSASSSICTSATPMSGNTYERTEDSGNNTRPNYMNLTQSTKAKLKSGNNPMYSRAQRQQSMDEFQFMRRAAGFSNGDSRSIAASDHSLNFSRPLHLPTSMDKSSVRPR* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0844 438 Pfam IQ calmodulin-binding motif 107 124 IPR000048 GO:0005515
Psa5g0844 438 Pfam IQ calmodulin-binding motif 85 104 IPR000048 GO:0005515
Psa5g0844 438 MobiDBLite consensus disorder prediction 214 233 - -
Psa5g0844 438 PANTHER IQ-DOMAIN 5-RELATED 4 437 - -
Psa5g0844 438 MobiDBLite consensus disorder prediction 301 363 - -
Psa5g0844 438 Gene3D - 81 131 - -
Psa5g0844 438 Pfam Protein of unknown function (DUF4005) 330 410 IPR025064 -
Psa5g0844 438 MobiDBLite consensus disorder prediction 374 393 - -
Psa5g0844 438 ProSiteProfiles IQ motif profile. 107 134 IPR000048 GO:0005515
Psa5g0844 438 MobiDBLite consensus disorder prediction 312 363 - -
Psa5g0844 438 MobiDBLite consensus disorder prediction 406 438 - -
Psa5g0844 438 SMART iq_5 82 104 IPR000048 GO:0005515
Psa5g0844 438 SMART iq_5 105 126 IPR000048 GO:0005515
Psa5g0844 438 MobiDBLite consensus disorder prediction 407 428 - -
Psa5g0844 438 ProSiteProfiles IQ motif profile. 83 111 IPR000048 GO:0005515
Psa5g0844 438 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 4 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0844 Psa-Chr5 66566953 66569301 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0844 4 432 IQD Protein Family AT2G26180 59.259 3.15e-141 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0844 - - gmx:100799714 598.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0844 5 66566953 66569301 Psa5g0844 5 66566953 66569301 ECH