Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0836 ATGGATCATCACGAAATCACCACTGGTCAAACTAAAACTCCACCATCATCTTCTTCTACTTCAACGGTTACTAATGATGATAATAACAAGAAGATGTACAGAGGTGTGAGAAAGAGGAAGTGGGGAAAATGGGTGTCGGAAATTCGGCTTCCAAATAGCCGTGAAAGAATATGGTTAGGATCATATGATTCACCGGAGAAAGCAGCAAGAGCGTTCGACGCTGCACTTTACTGTCTCCGTGGCCGTCATGCAAGTTTCAACTTCCCTGATACACCTTTTCATTTCGATATCACTGTAGTTTCTAACAATCCAGAACAGATTCGAGAGATTGCTGCTAATTTTGGCAACAAAAATCCACCAATTGTTAGTGATAGTACTACAAATTATAATAATGGAAATGATAATACAGACCAATCCAAAACTATGACTGAAATTATTGGCTCTTCGTCTTCTACTACTAGTACCACTGCTATGCATGATAATGGTGGGAACACGATTGATTGGACATTTTTGGATGTGTTGGATGGTTCAAGCAATGATGCTAATTTTGTTGGGTCTGAAAACTATGGTGGTTTCTATTCTGATCTAGAAAAGATGAATTCGGGTGAGTTATTCAGTTTACCACAGCAACTACCACTATTTGAGGATAATATTCAGAAGGAACTGGTTAAAGTTGAAGGTGATGATGATGTTTATGATGACCCTTTTTCTCATCAATCATTCCTTTGGAACTGGGACTTTTGA 744 0.3858 MDHHEITTGQTKTPPSSSSTSTVTNDDNNKKMYRGVRKRKWGKWVSEIRLPNSRERIWLGSYDSPEKAARAFDAALYCLRGRHASFNFPDTPFHFDITVVSNNPEQIREIAANFGNKNPPIVSDSTTNYNNGNDNTDQSKTMTEIIGSSSSTTSTTAMHDNGGNTIDWTFLDVLDGSSNDANFVGSENYGGFYSDLEKMNSGELFSLPQQLPLFEDNIQKELVKVEGDDDVYDDPFSHQSFLWNWDF* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0836 247 MobiDBLite consensus disorder prediction 8 29 - -
Psa5g0836 247 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 17 247 - -
Psa5g0836 247 MobiDBLite consensus disorder prediction 1 31 - -
Psa5g0836 247 Pfam AP2 domain 33 81 IPR001471 GO:0003700|GO:0006355
Psa5g0836 247 Gene3D AP2/ERF domain 31 90 IPR036955 GO:0003700|GO:0006355
Psa5g0836 247 ProSiteProfiles AP2/ERF domain profile. 32 89 IPR001471 GO:0003700|GO:0006355
Psa5g0836 247 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF018 17 247 - -
Psa5g0836 247 SUPERFAMILY DNA-binding domain 32 90 IPR016177 GO:0003677
Psa5g0836 247 CDD AP2 33 91 IPR001471 GO:0003700|GO:0006355
Psa5g0836 247 SMART rav1_2 32 95 IPR001471 GO:0003700|GO:0006355
Psa5g0836 247 PRINTS Ethylene responsive element binding protein signature 33 44 IPR001471 GO:0003700|GO:0006355
Psa5g0836 247 PRINTS Ethylene responsive element binding protein signature 55 71 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0836 Psa-Chr5 66245770 66246522 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0836 33 116 AP2-EREBP Transcription Factor Family AT1G19210 71.591 3.56e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Psa5g0836 AP2 7.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0836 - - mtr:MTR_3g105510 273.863