Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0814 ATGGAATCATCAAATGATGATCATAATCAGAATCAAACTAAAAATCTGAAGCGAACTTTCGATAAGTTGTACGTAAAACCCCATGTTGAAGTTTTCCCTTCTCAAGAATCCCTCATTACAAATTTGGTCCCTAGAAGGGATCAGTTAGAGGCGTTTGAGATTGCAAAGAGGAGGAACACAATAGCAATAATGGATACAGGTTCTGGAAAAACACTGATAGCTATAATGCTTATTAAAGAAATTGGTCAAGCTGTTAGGTCTAGTGGTGACAAAAAGATTATTGTTTTCTTAGCACCAACTGTTGTTTTGGTCAATCAGCAATACAAGAATATAAAACTTAACACAGATCTTCAAGTTGAGGAGTACCATGGGGCTAAAGGAGTTGATACATGGGAATTCAAGAGCTGGCAGAAGGAAGTTAGAGACAATGATGTAATGGTCATGACACCCCAGACTCTTTTGGATGCCTTAAGAAAAGCATTCCTGAGTATAGAAATGATATGCTTGATGGTCATCGATGAGTGTCATCAAGCATCAGGCAACCATCCCTATACAAAAATAATGGCGGAATTTTATCACCAAGCTAATGAAAAGCCAAAGATTTTTGGGATGACAGCATCACCAATTGGTAAAAGAGGTGTTTCTTCTACTTTGGATTGTAAGTATCAGATATCAGACCTTGAAAACATCTTAGATTCTCGGAAATATACGGTTAAAGATCGGACAGAGATGGATACATGTATTCCATCTGCAAAAGAGAGTTGTAGATACTATGACCAAGCACGATCTCCTGCTTTGAGTTTGAGGCCAAAAATTGAAGCCTCGTGGTCGAAGTGTGATGTGTTGTTATCAGATTTTCAAAGTAACTATAAGGATATGGACGATAAGTTTAAGACACTGCATCAAAGAATGTCCAATGAGCTTGCCAAAATTTTCTATTGCCTCGAAGATCTTGGACTGTTGTGTGCTTGTGAGGCTGCTAAAATATGTCATCAAAAATTCTCCAAAATTTATGGAGAATGTGAAGTTTACAGAAAAGCTAATCTTCAGTGTGTAACTGTCATTGAAGAAGTAATCCAAATAATCGAAGAATCCCTCCATCTTGCCGATGAAGTGATTTTGGATGTTGAATTTGATTTTTCAAAGGCAGTGAACATGGGATACATATCACCAAAATTACTTGAACTAATTAAACTCTTCCAAACATTTGGAGAACCTAGTCAATTATTGTGCCTCATTTTTGTGGAAAGAATCATTGCGGCTAAGGTGATTGAAATATTTGTGAAAAAAGTTTCCCAGATATCTCATTTCACAGTTGCCTATGTAACCGGAAGCAATACATCAGCTGATGCACTGGCTCGTAACAGGCAGAAAGAGATAATGGATTCTTTCCGATCCGGAAAGATCAATCTTCTATTTACTACTGATGTACTTGAGGAAGGAATCCATGTGCCAAACTGCTCGTGTGTGATACGTTTTGACCTCCCTACGACAGTTTGTAGTTATATCCAATCTCGTGGAAGATCTAGGCGTGCTAACTCGCAATTCATCTTGATGTTGGAGAGGGGAAACTTGAAGCAAAGAAATCAGCTTTTTGACGTTATCAGGGGGGAGCGTTCCATGACTGATGCAGCTGCTAGCAAAGACCATGAATCTAATTTAAGGGCGTTTACAGTAAGGAAAACGGAGTCATACTATGTAGATTCTACTGGAGCATCAGTAAATTTAGATTCTAGTGTTAGTCTTGTAAATCAGTATTGCGAAAAGCTCCCACGAGATAAGTACTCCTCGGCAAAGCCCAATTTTGAGTTACTACCTGTGGTGGGAGGGTACGAGTGTAAATTGATTTTACCACCTAATGCAGCTTTCCAAATAATGGTTGCGTCTTCAGGAAAAGACATGCGTTTGGCAAAGAGTCTTGTATGTTTGGAAGCTTGTAAGAAGCTGCATCAAATGGGCGCCTTAAATGATCATCTCGTTCCTTTCACTGAAGATCCTTCAGAAGCAGACATTTTGAAAAACAAGGAATCGAGTTCAGGTGCAGGCGCAGGAACCACAAAAAGAAAAGAGCTCCACGGAACGGCCGGCGTTCAGGCATTATGTGGTTCATGGGAGGACAAACTTGATGGAGCCAAATTTCATGGCTATAAATTTGAATTCCGATGTAATATTGTCGATGAAATTTACTCTGGCTTTGTTCTTCTGGTTGAGACAAAGCTTGACGATGATGTGGGAAATATGGAACTAGATCTGTATTTAATCTCAAAGATGGTGAAGACTTCTATCATTCCATGTGGGCAGGTTGACTTGGATGCTGAACAGGTGGCGAGAGCAAAAAGCTTCCATGAGCTTTTTTTCAATGGTTTGTTTGGGAGATTGATTCGTAAATCCAAATCAGCAGCAAAAGGAGAAAGGGAGTTTTTACTGCAGAAAGACACAGATTTATTGTGGAGTCCAAAAAACTCGTATTTGCTTCTACCACTTGAGAAGTCAAATGATATATGTACGGGATCTTTGCAAATACACTGGTCTGCAATTAGTTCTTGTTCTTCTGCCATTGAGTTTGTAAGGCGTAAGTTTTCGTTGGTTGCTGAAGATTCGGATGATACCAGTTCATCTGCTATGGAACCCGAAAGCACTAACATGTTTCACTTCGCCAATGATGTCGCGGATGTTAGTAACATTAAAGATACGGTAGCTTTGGCCATTCATACTGGAAAAATTTATTGTATCATTGATGTTGTTGAGAACTCATCTGCTGAAAATCCTTTTGATGGAAACAATGACAAGGCGGAAACAAAGACGTTCTCTCAATATTTCAAGAAAAGGTATGGAATCACACTAAAACATCCAGAACAGCCTTTGTTAAGGCTGAAGCAAGGTCATAATGCGCATAATCTTTTTTTGAACACTCCCGAGGAAGATGCAGGGGAAAAGTCATCACAAGTTGGCCCGGTTCCAAAAGCGCCAGTACACGTTCACATGCCACCTGAGCTTCTTTGCCTTCTTGATGTTAAAAGAGGCGTGTTGAAGTCAATGTACTTGCTACCGTCTCTTATGTACCGTATTGAATCTTTCATGTTATCCAGTCAGCTTAGAGCAGAGATAAATGGTCACGCTGACAATTTCAAGATACCTAGCTCTCTGATTCTTGAAGCACTTACGACTTTAAGATGCTGTGAGAAGTTTTCTATGGAACGTCTTGAGTTGCTAGGAGATTCTGTTTTGAAATACGCTGTCAGCTGTCATCTCTTTCTTAAATATCCTAAGAAACATGAAGGACATTTATCTGCCAAAAGACAATGGGCTGTTCGTAATTCAACCCTACATAAGCTTGGAATAGATCGCAAATTACAGGGATATATTCGAGACTCCGCATTTGAACCACGCCGTTGGGTTGCTCCCGGACAAGACTCTATACACACTGCTCCTTGTGATTGTGGGTTGGAAACCCTGGAGGTTCCTTTTGACACAAAGTTCATTACGGAAGATCCACAAGTTGTGGTTGGGAAGTTGTGTGACAGGGGTCACCGCTGGATGTGTTCAAAGACTATTGCCGACTGTGTTGAAGCTCTTATAGGAGCATACCACGTTGGTGGTGGATTGATTGCTTCACTTCACGTGATGAAATGGCTTGGAATTGATTCGGAACTTGAACTATCCATGGTCGAAGAAGCCATTGCTGCTGCATCTCTACATACATATAAGCCAAAAGTAAATGAGATTGCAAGCCTGGAGACAAAAATTGGATACGAATTTTCTGTCAAGGGACTCTTAGTGGAGGCAACCACACATTTATCTGAGACAGAACATGGAACTGGCTGCTGCTATGAGAGGCTTGAATTCCTCGGTGACTCGGTGTTGGACCTTCTCATCACATGGCATCTATATCAGAGTCACACTGAAATTGATCCGGGAGAGTTGACTGATTTGCGTTCTGCTTCTGTCAATAATGAAAGTTTTGCTCAAGCTGCTGTTAGAAGTAACCTTCACCCGCACCTTATGCATAGCTCAGGATTATTACAAGGCCAAATATCAGAATATGTGAAGGCCATTTCTGAATCAGAAGACAACACTGTATCACTCCCAGGGATTAAAGCTCCCAAGGCACTTGGAGATCTAGTTGAGAGTATCGCAGGAGCTATACTAATTGATACGAAGCTCGACCTTGATCAAGTGTGGAAGGTTTTCAATCCTCTGTTATCTCCCATTGTTACTCCCGACAAACTTGAACTGCCTCCATTGCGTGAATTAAATCAATTATGCGACTCTCTCGGCTATTTTGTAAAAGTAAAAGTAAAGTGCGACAAGAAGGGATTCATGGACCATGTTGTGCTTAGTGTACAGTTGCCAAATGCTCTTCTGGTTCGAGAGGGACGGGGACCTAATAAAAAATCTGCAAAAGGAGATGCTGCTTATCATTTGTTGAAGGACCTTGAGAAAAGGGGAATTTCGTATAGCTCGGCAAAGGGTAAAAGAGTAATAGATTTCAGTATTCCAGCTTGTCAAGCTGAAGAACAACCCCCAAAGCCAGTAGCACATAAAAAGCCCAAATTGGACAAATCTAACTTAACAGCAAAGGAATCTACTTCTGATATCAAGGAGACTTCCAGTGAATCCTCCGATTGTAGTGGTTCCGTTCCAGTTTTATCAATTAATATGAACAAGGGAGGACCCCGGAGCCTACTATATGCATTGTGCAAGAAAAAGCAGTGGCCATTGCCTTCATTTGATTCAACAGAATACAAGGACAGAAGTCAATTTCAATCGTGCGAAGGCCTGGAAGGAAGCAAAGGAACAAACTGTTTTGTGTCGAAAATAAGTTTGTGCATACCAGATGATGGTAATATAGAATGCAAAGGAGAAGCTAGAGCTGATAAGAAGAGCTCATTTGATTCTGCTGCAGTTCAAGCCCTCTACGAGCTTCAACGCCTCGGAAAAGTTCAAATCGCGGATGTTTCCCAATAA 4968 0.4068 MESSNDDHNQNQTKNLKRTFDKLYVKPHVEVFPSQESLITNLVPRRDQLEAFEIAKRRNTIAIMDTGSGKTLIAIMLIKEIGQAVRSSGDKKIIVFLAPTVVLVNQQYKNIKLNTDLQVEEYHGAKGVDTWEFKSWQKEVRDNDVMVMTPQTLLDALRKAFLSIEMICLMVIDECHQASGNHPYTKIMAEFYHQANEKPKIFGMTASPIGKRGVSSTLDCKYQISDLENILDSRKYTVKDRTEMDTCIPSAKESCRYYDQARSPALSLRPKIEASWSKCDVLLSDFQSNYKDMDDKFKTLHQRMSNELAKIFYCLEDLGLLCACEAAKICHQKFSKIYGECEVYRKANLQCVTVIEEVIQIIEESLHLADEVILDVEFDFSKAVNMGYISPKLLELIKLFQTFGEPSQLLCLIFVERIIAAKVIEIFVKKVSQISHFTVAYVTGSNTSADALARNRQKEIMDSFRSGKINLLFTTDVLEEGIHVPNCSCVIRFDLPTTVCSYIQSRGRSRRANSQFILMLERGNLKQRNQLFDVIRGERSMTDAAASKDHESNLRAFTVRKTESYYVDSTGASVNLDSSVSLVNQYCEKLPRDKYSSAKPNFELLPVVGGYECKLILPPNAAFQIMVASSGKDMRLAKSLVCLEACKKLHQMGALNDHLVPFTEDPSEADILKNKESSSGAGAGTTKRKELHGTAGVQALCGSWEDKLDGAKFHGYKFEFRCNIVDEIYSGFVLLVETKLDDDVGNMELDLYLISKMVKTSIIPCGQVDLDAEQVARAKSFHELFFNGLFGRLIRKSKSAAKGEREFLLQKDTDLLWSPKNSYLLLPLEKSNDICTGSLQIHWSAISSCSSAIEFVRRKFSLVAEDSDDTSSSAMEPESTNMFHFANDVADVSNIKDTVALAIHTGKIYCIIDVVENSSAENPFDGNNDKAETKTFSQYFKKRYGITLKHPEQPLLRLKQGHNAHNLFLNTPEEDAGEKSSQVGPVPKAPVHVHMPPELLCLLDVKRGVLKSMYLLPSLMYRIESFMLSSQLRAEINGHADNFKIPSSLILEALTTLRCCEKFSMERLELLGDSVLKYAVSCHLFLKYPKKHEGHLSAKRQWAVRNSTLHKLGIDRKLQGYIRDSAFEPRRWVAPGQDSIHTAPCDCGLETLEVPFDTKFITEDPQVVVGKLCDRGHRWMCSKTIADCVEALIGAYHVGGGLIASLHVMKWLGIDSELELSMVEEAIAAASLHTYKPKVNEIASLETKIGYEFSVKGLLVEATTHLSETEHGTGCCYERLEFLGDSVLDLLITWHLYQSHTEIDPGELTDLRSASVNNESFAQAAVRSNLHPHLMHSSGLLQGQISEYVKAISESEDNTVSLPGIKAPKALGDLVESIAGAILIDTKLDLDQVWKVFNPLLSPIVTPDKLELPPLRELNQLCDSLGYFVKVKVKCDKKGFMDHVVLSVQLPNALLVREGRGPNKKSAKGDAAYHLLKDLEKRGISYSSAKGKRVIDFSIPACQAEEQPPKPVAHKKPKLDKSNLTAKESTSDIKETSSESSDCSGSVPVLSINMNKGGPRSLLYALCKKKQWPLPSFDSTEYKDRSQFQSCEGLEGSKGTNCFVSKISLCIPDDGNIECKGEARADKKSSFDSAAVQALYELQRLGKVQIADVSQ* 1656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0814 1655 Gene3D - 383 544 IPR027417 -
Psa5g0814 1655 Pfam Type III restriction enzyme, res subunit 30 208 IPR006935 GO:0003677|GO:0005524|GO:0016787
Psa5g0814 1655 SMART PAZ_2_a_3 869 1028 IPR003100 GO:0005515
Psa5g0814 1655 PANTHER DICER-RELATED 34 1647 - -
Psa5g0814 1655 SMART ultradead3 40 244 IPR014001 -
Psa5g0814 1655 CDD DEXHc_dicer 44 240 - -
Psa5g0814 1655 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1458 1481 IPR014720 -
Psa5g0814 1655 ProSiteProfiles Ribonuclease III family domain profile. 1029 1201 IPR000999 GO:0004525|GO:0006396
Psa5g0814 1655 Pfam Ribonuclease III domain 1278 1386 IPR000999 GO:0004525|GO:0006396
Psa5g0814 1655 Pfam Ribonuclease III domain 1066 1199 IPR000999 GO:0004525|GO:0006396
Psa5g0814 1655 Gene3D Dicer dimerisation domain 574 672 IPR038248 -
Psa5g0814 1655 PANTHER ENDORIBONUCLEASE DICER HOMOLOG 3 34 1647 - -
Psa5g0814 1655 MobiDBLite consensus disorder prediction 1506 1540 - -
Psa5g0814 1655 CDD SF2_C_dicer 388 520 - -
Psa5g0814 1655 Gene3D Ribonuclease III domain 1032 1212 IPR036389 GO:0004525|GO:0006396
Psa5g0814 1655 ProSitePatterns Ribonuclease III family signature. 1278 1286 IPR000999 GO:0004525|GO:0006396
Psa5g0814 1655 Pfam Helicase conserved C-terminal domain 408 513 IPR001650 -
Psa5g0814 1655 ProSiteProfiles PAZ domain profile. 894 1004 IPR003100 GO:0005515
Psa5g0814 1655 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 395 555 IPR001650 -
Psa5g0814 1655 SMART helicmild6 425 513 IPR001650 -
Psa5g0814 1655 SUPERFAMILY RNase III domain-like 1241 1407 IPR036389 GO:0004525|GO:0006396
Psa5g0814 1655 CDD RIBOc 1048 1212 IPR000999 GO:0004525|GO:0006396
Psa5g0814 1655 Gene3D Ribonuclease III domain 1238 1409 IPR036389 GO:0004525|GO:0006396
Psa5g0814 1655 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 51 226 IPR014001 -
Psa5g0814 1655 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 91 517 IPR027417 -
Psa5g0814 1655 SUPERFAMILY RNase III domain-like 1042 1218 IPR036389 GO:0004525|GO:0006396
Psa5g0814 1655 Gene3D - 1565 1644 - -
Psa5g0814 1655 ProSiteProfiles Ribonuclease III family domain profile. 1242 1387 IPR000999 GO:0004525|GO:0006396
Psa5g0814 1655 Gene3D - 39 272 IPR027417 -
Psa5g0814 1655 Gene3D paz domain 874 1004 - -
Psa5g0814 1655 SUPERFAMILY PAZ domain 893 1003 IPR036085 GO:0005515
Psa5g0814 1655 MobiDBLite consensus disorder prediction 1509 1535 - -
Psa5g0814 1655 CDD RIBOc 1258 1408 IPR000999 GO:0004525|GO:0006396
Psa5g0814 1655 Pfam PAZ domain 884 1024 IPR003100 GO:0005515
Psa5g0814 1655 Pfam Dicer dimerisation domain 579 664 - -
Psa5g0814 1655 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 579 669 IPR005034 GO:0016891
Psa5g0814 1655 SMART riboneu5 1257 1410 IPR000999 GO:0004525|GO:0006396
Psa5g0814 1655 SMART riboneu5 1048 1221 IPR000999 GO:0004525|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0814 Psa-Chr5 65225447 65236950 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0814 443 511 Eukaryotic Initiation Factors Gene Family AT1G72730 46.377 1.26e-07 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0814 K11592 - gmx:100806831 2344.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0814 5 65225447 65236950 Psa5g0814 5 65225447 65236950 ECH