Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0812 ATGGCGGATGTTTTGGTAATGAAAGAGATTGAAGACAAAGCGTTAACTCTCGGAATTGATTTATCTACTGTTGATCTCGATTCCATTCACCTTCCACCTGGTGAAGACTATGGCATATTCAGTGATGATGAAGAAGTTTATAAAGAGGAGAATCTTGAGTTTGATACAGGTTTTGGAAACATTATAGTAGTGGATAATACCCCTGTTGTTACCAAAGAGAAATTCACAAAGCTTGAAGGTGTTATTAGGAAAATTTTTAGTCAGATTGGTGTTATTAAGGATGATGGCTTCTGGATGCCTGTTGATCCTGCCACTGAAAAGACCGTTGGTTACTGCTTCATTGAGTTCAATACTCCTCAGGAAGCCGAGCTTGCTAAAGAGAGGGGCCAGGGATACAAATTGGATCGTTTGCACATATTTACCGTTAGTATGTTTGATGATTTTGACCGTTTTATGAGAGTGCCAGATGAGTGGGCTCCTCCTCCAAAAAAGGATTATGCTCCAGGGGAAAATCTTCAACAATGGCTTACTGATGCTAAGGCCCGAGACCAGTTTGTGATTCGTGCTAGTTCAGATACTGAGGTTTTGTGGAATGACGCTAGGCATTTAAAGCCTGATCCTGTTTATAAACGTGCTTTTTGGACCGAGAGTTTTGTACAATGGTCTCCTCTGGGCACATACTTGGCAACAGTTCACCGTCAGGGTGCAGCAGTCTGGGGAGGTGCTACAACCTTCAATCGTCTCATGCGTTATGCTCATCCCCAGGTGAAACTAATTGATTTTTCACCTGGTGAGAAGTATTTGGTAACTTATAGCAGCCATGAACCAAGCAATCCCCGGGATGCTAATAGGGTTATAATAAATATATTTGATGTGAGAACTGGTAAAGTTATGAGAGATTTTAAGGGAAGTGCTGATGATTTTGCTATCGGAGGTACTGGTGGTGTCACCGGAGTGTCTTGGCCAGTTTTCAAATGGAGTGGTGGAAGAGAAGATAAGTACTTTGCAAGGATGGGGAAGAATGTACTTTATGTGTATGAGGCAGAAACATTTTCTCTCGTGGACAAAAAATCCTTAAAAGTTGAAAATATAATGGATTTCAGCTGGTCACCAACTGATCCAATCATTTCACTGTTTGTTCCCGAGACGGGAGGTGGGAACCAGCCTGCCAGGGTAAGTCTTGTTTCAATCCCAAGCAAAGAAGAACTCAGACAGAAGAACCTTTTTAGCGTCAGTGACTGCAAGATGTACTGGCAGAGCAATGGGGATTACCTTGCTGTTAATGTGGACCGATATACCAAGACAAAGAAAAGTACTTACACTGGCTTTGAGCTTTTCCGTATTAAGGAACGTGACATACCCATTGAAGTTCTAGAGCTTGAGAATAAGAATGATAAGATCATTGCATTTGCGTGGGAGCCAAAGGGACATAGGTTTGCTGTTATTCATGGGGATAACCCTAAGCCTGATATTAGTATCTATTCTATGCGGACTGCTCAGCACACTGGCCGTGTTTCAAAGCTTACTACTCTGAAAGGAAAGCAGGCAAATGCTTTATTTTGGTCTCCTGCAGGCCGCTTCATTGTATTAGCAGGGTTGAAAGGCTTCAATGGACTGTTGGAATTTTACAATGTTGATGAGCTTGAAACCATGGCTACTACTGATCATTTTATGGCAACTGACGTTGAATGGGATCCAACTGGAAGGTATGTTGCAACTGCTGTGACTTCGGTTCATGAAATGGAGAATGGATTCAATATATGGTCTTTTAATGGCAAACATCTTTATCGGATATTGAAGGATCACTTCTTTCAGTTCTTATGGAGACCAAGGCCACCATCCTTCTTGACTCCTGAGAAAGAGGAAGAGATTGCAAAGAACTTGAAGAAGTATAGTAAGAAATATGAAGCAGAAGATCAAGATGTTTCGTTGCTGCTGAGTGAGCAGGAGCGTGAGAAGCGAAGGGTGTTGAAAGAAGATTGGGACAAGTGGCTCAATGAGTGGAAGCTGATGCATGAAGAAGAGAGGTTGGATAGGATAAATCTGAGGGATGGGGAAGCTAGTGACGAGGAAGAGGAATACGAGGCAAAGGACATTGAAGTTGAGGAGGTAGTGGATGTTACCAAAGAGATCCTTCACTTTGAGTATGGTCAAGAGTGA 2160 0.4227 MADVLVMKEIEDKALTLGIDLSTVDLDSIHLPPGEDYGIFSDDEEVYKEENLEFDTGFGNIIVVDNTPVVTKEKFTKLEGVIRKIFSQIGVIKDDGFWMPVDPATEKTVGYCFIEFNTPQEAELAKERGQGYKLDRLHIFTVSMFDDFDRFMRVPDEWAPPPKKDYAPGENLQQWLTDAKARDQFVIRASSDTEVLWNDARHLKPDPVYKRAFWTESFVQWSPLGTYLATVHRQGAAVWGGATTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVIINIFDVRTGKVMRDFKGSADDFAIGGTGGVTGVSWPVFKWSGGREDKYFARMGKNVLYVYEAETFSLVDKKSLKVENIMDFSWSPTDPIISLFVPETGGGNQPARVSLVSIPSKEELRQKNLFSVSDCKMYWQSNGDYLAVNVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPKPDISIYSMRTAQHTGRVSKLTTLKGKQANALFWSPAGRFIVLAGLKGFNGLLEFYNVDELETMATTDHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKHLYRILKDHFFQFLWRPRPPSFLTPEKEEEIAKNLKKYSKKYEAEDQDVSLLLSEQEREKRRVLKEDWDKWLNEWKLMHEEERLDRINLRDGEASDEEEEYEAKDIEVEEVVDVTKEILHFEYGQE* 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0812 719 PIRSF Transl_init_eIF3b 7 713 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Psa5g0812 719 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 135 IPR000504 GO:0003723
Psa5g0812 719 Gene3D - 178 383 IPR015943 GO:0005515
Psa5g0812 719 SUPERFAMILY RNA-binding domain, RBD 79 142 IPR035979 GO:0003676
Psa5g0812 719 PANTHER BNACNNG51870D PROTEIN 8 712 - -
Psa5g0812 719 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 8 712 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Psa5g0812 719 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 147 IPR000504 GO:0003723
Psa5g0812 719 Pfam Eukaryotic translation initiation factor eIF2A 406 606 IPR013979 -
Psa5g0812 719 CDD RRM_eIF3B 59 142 IPR034363 -
Psa5g0812 719 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 49 713 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Psa5g0812 719 Gene3D - 416 624 IPR015943 GO:0005515
Psa5g0812 719 SUPERFAMILY DPP6 N-terminal domain-like 218 600 - -
Psa5g0812 719 Gene3D - 55 154 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0812 Psa-Chr5 65184990 65189658 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0812 9 713 Eukaryotic Initiation Factors Gene Family AT5G27640 75.637 0.0 1149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0812 K03253 - gmx:100817394 1338.17