Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0750 ATGGCTTCCAAACTCTGTGACTCATGCCAATCCGCCACCGCGACTCTCTACTGCCGCCCCGACTCCGCCTTCCTCTGCACCGCCTGCGATTCCAAAGTACATGCCGCTAACAAACTCGCCTCCCGTCACCCTCGCGTCACTCTATGCGAAGTCTGCGAGCAAGCACCTGCACACGTCACCTGTAAAGCCGATGCCGCCGCTCTCTGTATCTCATGCGACCGTGACATCCACTCCGCTAACCCCCTCGCCGCTCGCCATGAGCGTCTTCCTATTACTCCTCTCTTCGAATCCATTACTTCTCACTCCGAGAAAACGCTTCACAATAACAACAACTACGATGCTGTTAAAGATGAAGCCGAAGCTGCTTCATGGTTGCTCACCGATCCCAAGGCAGATCTCAATTCATCTCCTTACATGTTCTCCGATTCCGAAGCTATTCCGTTCATGGATCTTGATTACGGTGTTATCGAACATAAAAACGTTGATGGTGTAGTTCCCGATCACGGTAACTTCGATCTTTTCGCTTATGCGTTCAAAAACAACAACGTGCAGCCACATACGGAGATAGAGACACCGTCACCGTCACCGTCACAGTCGCAGATTAGTCACAGTGTGGTGTCATCGTCGATGGAGGTCGGAGTTGTTCCCGATGGAGAAGCTGTATCGGAGATATCGAACGGTGGATGCGGCAAGGTGGTGGTGGCGGCGGATCGTGAAGCTAAGGTAATGAGGTATAGGGAGAAGAGGAAGAATCGAAGGTTCGAGAAGACGATTCGTTACGCTTCTCGTAAAGCTTATGCCGAAACTAGGCCAAGGATCAAAGGACGGTTTGCGAAACGTACAGATGCCGTTGATTCTCTCGGTGGATACGGCGTCGTTCCCACTTGTTGA 891 0.5174 MASKLCDSCQSATATLYCRPDSAFLCTACDSKVHAANKLASRHPRVTLCEVCEQAPAHVTCKADAAALCISCDRDIHSANPLAARHERLPITPLFESITSHSEKTLHNNNNYDAVKDEAEAASWLLTDPKADLNSSPYMFSDSEAIPFMDLDYGVIEHKNVDGVVPDHGNFDLFAYAFKNNNVQPHTEIETPSPSPSQSQISHSVVSSSMEVGVVPDGEAVSEISNGGCGKVVVAADREAKVMRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRTDAVDSLGGYGVVPTC* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0750 296 ProSiteProfiles CCT domain profile. 238 280 IPR010402 GO:0005515
Psa5g0750 296 Pfam CCT motif 238 280 IPR010402 GO:0005515
Psa5g0750 296 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 1 293 IPR045281 GO:0009909
Psa5g0750 296 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Psa5g0750 296 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270
Psa5g0750 296 Pfam B-box zinc finger 4 47 IPR000315 GO:0008270
Psa5g0750 296 CDD Bbox1_BBX-like 5 48 - -
Psa5g0750 296 SMART bboxneu5 49 91 IPR000315 GO:0008270
Psa5g0750 296 SMART bboxneu5 1 48 IPR000315 GO:0008270
Psa5g0750 296 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 3 1 293 - -
Psa5g0750 296 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Psa5g0750 296 CDD Bbox1_BBX-like 48 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0750 Psa-Chr5 61613251 61615757 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0750 1 295 C2C2-CO-like Transcription Factor Family AT5G24930 48.919 1.26e-92 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Psa5g0750 zf-B_box 2.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0750 - - mtr:MTR_3g105710 472.626