Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0742 ATGAGTAGCTTGGTTGAGAGGCTTCGAGTAAGATCAGAACGCAAGCCAGTGTATAATATTGATGAGTCAGATGATGATGATTTTTTGCTTAAGAAACCCGGGACAAGCCAGGAAAAGTTTGAGAGGATAGTCAGAAGTGATGCAAAAGAGGATTTATGTCAAGCCTGTGGTGAAAGTGAAGGTCTCCTGAGTTGTGAAACTTGCACCTATGCTTACCATTCTAGGTGTTTACTTCCACCACTTAAAGGTCCTGCTCCTGACAGCTGGAGGTGCCCTGAATGTGTTAGCCCCCTTACTGATATTGATAAGATATTAGACTGTGAGATGCGTCCTACTCAAGACAGTGATGGTGATGGCGAGGGCGATGGCGACGGTGACACCACGAAATCTGGGTCAAAGCAAATTTTTGTTAAACAATACCTTGTTAAGTGGAAGGGACTATCTTATCTGCACTGTGCATGGGTGCCAGAGAAAGAGTTTCTGAAAGCTTTTAAGAATCATCCTCGTCTGAAGACCAAAGTGAACAACTTCCACCGTCAAATGTCATCCGCCAATACTTCAGATGAAGACTTTGTTGCCATCCGTCCTGAATGGACTACAGTTGATCGAATAATTGCTTTCAGGGGTGATAGCGATGAGAGGGAATATCTGGTGAAGTGGAAAGAGCTTCCATATGATGAATGTTATTGGGAATCTGAGTCTGATATTTCAGCATTTCAGCCGGAAATAGAAAGATTCAATAAATTTCGTTCTAGATCGAGCAAACTTGCTTCCATTAAGCAAAAAAGCCGTGTTAACGATGACACTGAATTGAAGAAACAGCAGAAAGAATTTCAACAGTATGAACATAGCCCCAAGTTTCTTTCAGGAGGTTCTCTACACCCATATCAGCTTGAAGGCTTGAACTTCTTACGATTCTCTTGGTCCAAGCAAACACATGTTATACTTGCTGATGAGATGGGACTTGGAAAAACTATTCAGAGTATCGCTTTCTTAGCATCCCTTTTTGAAGAGGGTGTCTCTAAACACCCACATCTGGTGGTTGCTCCACTTTCAACGCTGCGAAACTGGGAACGTGAATTTGCAACATGGGCCCCTCAGATGAATGTTATTATGTATGTTGGATCTGCCCAAGCTCGTAGTGTTATCAGAGAATATGAATTTTACTTTCCCAAGAAAATGAAGAAGTTAAAGAAAAAGAAATCTGGTCAGATAGTTAGCGAAAGTAAGCATGACAGAATAAAATTTGATGTCCTTTTGACATCATATGAGATGATCAACTTGGATACAACATCATTAAAACCTATAAAATGGGAGTGCATGATAGTCGATGAAGGTCACCGCCTCAAAAATAAGGATTCAAAATTATTTTCTTCTTTGAAGCAATATTTTACCAGACATCGTGTGCTCTTGACCGGAACTCCTCTTCAGAACAACTTGGACGAGCTTTTTATGCTTATGCATTTCCTTGATGCTGGAAAGTTTGGAAGTTTAGAGGAATTCCAAGAAGAATTCAGGGATATCAATCAAGAGGAACAGATTTCAAGGCTTCATAAAATGCTGGCACCACATCTTCTGCGAAGAGTGAAGAAAGATGTCATGAAGGAACTACCTCCTAAAAAGGAACTTATTCTACGAGTTGATTTGAGCAGCAAACAGAAAGAATATTATAAGGCAATTTTGACCCGTAATTATCAGATATTAACTCGCCGTGGCGGTGCACAGATTTCTCTTATCAATGTTGTTATGGAACTGCGTAAGCTCTGTTGTCATGCTTACATGTTAGAAGGAGTTGAGCCAGATATTGACGATCCAAAAGAAGCATTCAAACAATTGTTGGAATCATCAGGGAAGTTGCACTTGCTGGACAAGATGATGGTGAAGCTTAAAGAGCAAGGACATAGAGTTCTTATATACACCCAATTTCAGCACATGCTTGATTTGCTTGAAGATTATTGCTCTTACAAGAGATGGCAGTATGAAAGGATAGATGGCAAGGTTGGTGGAGCTGAAAGACAGATACGGATAGATCGTTTTAATGCCAAAAATTCTTCAAGATTTTGCTTTCTTCTTTCTACCAGAGCTGGGGGTTTGGGGATAAACCTTGCAACTGCTGACACAGTTGTTATATATGACAGTGATTGGAATCCTCATGCTGACTTGCAAGCAATGGCTAGAGCTCATCGACTTGGACAAACTAACAAGGTGTTGATTTATAGGCTTGTAACAAGAGGAACGATTGAAGAAAGGATGATGCAAATGACTAAGAAGAAAATGGTGTTAGAACACCTTGTTGTAGGAAGGCTAAAGGCACAAAATATCAACCAGGAAGAGCTGGATGACATTATACGGTATGGCTCAAAGGAGTTATTTGCAGACGAGAACGATGAAGCAGGAAAATCCCGTCAAATCCATTATGATGCAGCTGCTATTGATAGGTTGCTGGACCGTGACCAAGTTGTAGATGAAGATACTACTTTGGATGATGAAGAGGAAGATGGATTTCTGAAGGCCTTTAAGGTTGCAAATTTTGAGTACGTTGATGAGGCTGAGGCTGCAGCAGAAGCTGCAGCAGAGGAGGCAGCACAAAAAAGAGCAATGGAAACCGTAAACAGTTCAGAAAGAACACATTATTGGGAAGAGTTGTTAAAAGACAAGTTTCAAGAGCATAAAGTTGAGGAGTTTAATGCTTTGGGCAAAGGGAAGCGAAACCGCAAATTGATGGTTTCTGTTGAGGAGGACGACCTTGCTGGTCTGGAAGATGTAAGCTCCGACGAAGACGACAATTATGAAGCAGAACTTACTGACGGTGATTCAAATTCCACTGGAACTACTTCTAGTAGAAGGCCATATAAGAAAAAAGCACGCACGGATAACGCAGAGCCACTTCCTCTGATGGAAGGTGAAGGAAAAGCATTTAGAGTACTTGGTTTTAATCAAAATCAAAGGGCTGCCTTTGTGCAAATTTTGATGAGGTTTGGGGTTGGTGATTTTGATTGGAAGGAGTTTAGTTCCCGCATGAAGCAGAAGACTTATGAAGAAATCAAAGATTATGGAACCCTTTTCTTGTCTCACATTGCTGAAGATATAACTGATTCCTCTACATTCACAGATGGTGTTCCGAAAGAAGGACTCCGAATCCAAGATGTACTCGTTAGGATTGCAGTCCTGCTCTTGTTAAGGGACAAAGTGAGGTTTGCATCGGAATATCCTCGAACTCCACTGTTTTCAGATGACATCTTATTACGTTATCCGGGTTTGAAGGGTGTAAGGAAGTGGAAGGAGGAGCATGATCTTTTGCTACTGCGTGCTGTGTTAAAGCATGGGTATGGAAGGTGGCAAGCTATTGTAGATGATAAGGATCTGAAGATTCAGGAGATCATCTGCCAGGAGTTGAATCTTCCCGTTATAAATTTACCAGGACCAGGACAAGTTGGCTCTCATGTACAAAATGGTGCGAATTTGGCAAATGCAGAAATACCCAGCAATGAATCCAGGGAAAATGGTGGAAGTGACATAGCAGCTGATGGTGCACAGGGTTCAAGTGATGCTAGGAATCAACCACAGCTATATCAAGACTCGTCCATGATATATCATTTTAGAGACATGCAAAGAAGACAGGTTGAGTTTGTAAAGAAGAGGGTTCTTCTTTTGGAAAAGGGGCTCAATGCTGAGTACCAGAAAGAATACTTTGGTGATCCAAAAGCTGGTGAAGTAACCAATGAAGAACTTAGAAGTGAACTCAAGTCTACCAGTGTTCCAAGTTATAAACCAGTGGATACTAATACCCAAATGATCGATCAATTGCCACAAGTAGAAACCATAGCTCCAGAAGATGTTTCAGTTGCTTGTGATAGTGATCCAAATCGATTGGAGTTAGTTCGACTTTACAACGAGATGTGCAAGGTAGTTGAGGAAAACCCCATGGATTTAGTTCAAGCTTCATTGGCAGGAGAACCGGCAGAGGTCAATGCAGTGAAGAAGTTGGCACCACTAGAAACCATCAGTGAAAATATCAACAGAACCCTAACACCCACAGTACCAGAAACTCCGATATTAAATTCAGACAACAGATCGGAGGCTCCCCCTCAAAATGACTGCAAACTTGATTCTTCAGCAGCAGATGGCAAGCCTCAAGACATGGTAATAGAATGTGATCCTATAAAAGAAAGCTGCTCAAGCCTCTTAAATGAGAAAAAGGAAAGTAATACTGAGATGGATGAAAGTCATGCTGAGTTGAATGAGAATTCTGATGCTGGAGTCATTGTATTGGATGAGTAA 4281 0.4121 MSSLVERLRVRSERKPVYNIDESDDDDFLLKKPGTSQEKFERIVRSDAKEDLCQACGESEGLLSCETCTYAYHSRCLLPPLKGPAPDSWRCPECVSPLTDIDKILDCEMRPTQDSDGDGEGDGDGDTTKSGSKQIFVKQYLVKWKGLSYLHCAWVPEKEFLKAFKNHPRLKTKVNNFHRQMSSANTSDEDFVAIRPEWTTVDRIIAFRGDSDEREYLVKWKELPYDECYWESESDISAFQPEIERFNKFRSRSSKLASIKQKSRVNDDTELKKQQKEFQQYEHSPKFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEEGVSKHPHLVVAPLSTLRNWEREFATWAPQMNVIMYVGSAQARSVIREYEFYFPKKMKKLKKKKSGQIVSESKHDRIKFDVLLTSYEMINLDTTSLKPIKWECMIVDEGHRLKNKDSKLFSSLKQYFTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFRDINQEEQISRLHKMLAPHLLRRVKKDVMKELPPKKELILRVDLSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHAYMLEGVEPDIDDPKEAFKQLLESSGKLHLLDKMMVKLKEQGHRVLIYTQFQHMLDLLEDYCSYKRWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVVIYDSDWNPHADLQAMARAHRLGQTNKVLIYRLVTRGTIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFADENDEAGKSRQIHYDAAAIDRLLDRDQVVDEDTTLDDEEEDGFLKAFKVANFEYVDEAEAAAEAAAEEAAQKRAMETVNSSERTHYWEELLKDKFQEHKVEEFNALGKGKRNRKLMVSVEEDDLAGLEDVSSDEDDNYEAELTDGDSNSTGTTSSRRPYKKKARTDNAEPLPLMEGEGKAFRVLGFNQNQRAAFVQILMRFGVGDFDWKEFSSRMKQKTYEEIKDYGTLFLSHIAEDITDSSTFTDGVPKEGLRIQDVLVRIAVLLLLRDKVRFASEYPRTPLFSDDILLRYPGLKGVRKWKEEHDLLLLRAVLKHGYGRWQAIVDDKDLKIQEIICQELNLPVINLPGPGQVGSHVQNGANLANAEIPSNESRENGGSDIAADGAQGSSDARNQPQLYQDSSMIYHFRDMQRRQVEFVKKRVLLLEKGLNAEYQKEYFGDPKAGEVTNEELRSELKSTSVPSYKPVDTNTQMIDQLPQVETIAPEDVSVACDSDPNRLELVRLYNEMCKVVEENPMDLVQASLAGEPAEVNAVKKLAPLETISENINRTLTPTVPETPILNSDNRSEAPPQNDCKLDSSAADGKPQDMVIECDPIKESCSSLLNEKKESNTEMDESHAELNENSDAGVIVLDE* 1427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0742 1426 SUPERFAMILY Chromo domain-like 185 249 IPR016197 -
Psa5g0742 1426 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 305 493 IPR014001 -
Psa5g0742 1426 SMART chromo_7 197 251 IPR000953 -
Psa5g0742 1426 SMART chromo_7 98 175 IPR000953 -
Psa5g0742 1426 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 621 782 IPR001650 -
Psa5g0742 1426 Pfam PHD-finger 53 95 IPR019787 -
Psa5g0742 1426 CDD CD2_tandem 197 248 - -
Psa5g0742 1426 MobiDBLite consensus disorder prediction 1346 1366 - -
Psa5g0742 1426 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 254 528 IPR027417 -
Psa5g0742 1426 ProSiteProfiles Zinc finger PHD-type profile. 50 97 IPR019787 -
Psa5g0742 1426 SMART helicmild6 647 731 IPR001650 -
Psa5g0742 1426 MobiDBLite consensus disorder prediction 917 962 - -
Psa5g0742 1426 Pfam Chromo (CHRromatin Organisation MOdifier) domain 200 248 IPR023780 -
Psa5g0742 1426 Pfam Chromo (CHRromatin Organisation MOdifier) domain 127 165 IPR023780 -
Psa5g0742 1426 ProSitePatterns Zinc finger PHD-type signature. 53 94 IPR019786 -
Psa5g0742 1426 MobiDBLite consensus disorder prediction 1397 1426 - -
Psa5g0742 1426 SMART DUF1086_2 924 1081 IPR009462 GO:0003677|GO:0006338
Psa5g0742 1426 ProSiteProfiles Chromo and chromo shadow domain profile. 199 248 IPR000953 -
Psa5g0742 1426 Pfam SNF2-related domain 313 594 IPR000330 GO:0005524|GO:0140658
Psa5g0742 1426 Gene3D - 187 248 - -
Psa5g0742 1426 SMART DUF1087_2 852 918 IPR009463 -
Psa5g0742 1426 MobiDBLite consensus disorder prediction 917 934 - -
Psa5g0742 1426 CDD CD1_tandem 101 179 - -
Psa5g0742 1426 Pfam CHD subfamily II, DUF1087 857 915 IPR009463 -
Psa5g0742 1426 ProSiteProfiles Chromo and chromo shadow domain profile. 99 189 IPR000953 -
Psa5g0742 1426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 43 98 IPR013083 -
Psa5g0742 1426 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 5 1066 - -
Psa5g0742 1426 MobiDBLite consensus disorder prediction 1346 1379 - -
Psa5g0742 1426 Gene3D - 99 182 - -
Psa5g0742 1426 Gene3D - 285 537 IPR038718 -
Psa5g0742 1426 MobiDBLite consensus disorder prediction 1397 1414 - -
Psa5g0742 1426 SUPERFAMILY Chromo domain-like 65 184 IPR016197 -
Psa5g0742 1426 Pfam Helicase conserved C-terminal domain 619 731 IPR001650 -
Psa5g0742 1426 CDD SF2_C_SNF 616 742 - -
Psa5g0742 1426 PANTHER CHD3-TYPE CHROMATIN-REMODELING FACTOR PICKLE 5 1066 - -
Psa5g0742 1426 SMART PHD_3 52 95 IPR001965 -
Psa5g0742 1426 Pfam CHD subfamily II, SANT-like domain 945 1078 IPR009462 GO:0003677|GO:0006338
Psa5g0742 1426 Coils Coil 1396 1416 - -
Psa5g0742 1426 Coils Coil 847 867 - -
Psa5g0742 1426 Gene3D - 538 762 IPR027417 -
Psa5g0742 1426 SMART ultradead3 289 504 IPR014001 -
Psa5g0742 1426 Gene3D - 1048 1223 - -
Psa5g0742 1426 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 530 786 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0742 Psa-Chr5 60202900 60222627 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0742 610 782 RAD5 or RAD16-like Gene Family AT5G22750 31.792 3.39e-22 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Psa5g0742 SNF2_N 9e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0742 K11643 - gmx:100790230 2373.2