Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0741 ATGGACGATTCCACTGATCTCTTTCCCATCGGAATGCGTGTTCTTGCCGTCGACGACGACCCCACTTGCCTCAGAGTCTTGGAAACTCTACTCAGAAGATGTCAATACCATGTAACTACAACTAGTCAAGCTATAACGGCATTGACTATGCTAAGAGAGAACAAAGACAAGTTTGACTTGGTTATCAGTGATGTGCACATGCCAGACATGGATGGATTTAAGCTGCTTGAGCTTGTGGGACTTGAGATGGACCTTCCTGTTATAATGTTGTCTGCGTATGGCGATACGAAGCTGGTGATGAAGGGGATTTCCCATGGTGCTTGTGATTATCTGCTGAAACCTGTGAGATTAGAGGAGTTAAAGAACATTTGGCAGCATGTGATTAGGAAGAAGAAATCTGATTCGAAGGGGAAAAACAAAACCAGCAAGCCAGACAATGCTACTTCTGATAGTGGCAGCGGACTAAGATCAGCGGGAACAGAAAATTCAGATGAAAATGGGAAGTTGACTAAGAAAAGGAAGGATCAGGATGAAGATGAAGATGAGGATAAAGAGAATGGTAACGACAATGAGGACCCGTCAGCTCAGAAGAAGCCACGAGTTGTTTGGTCTGTGGAGTTGCACCGCAAGTTTGTTGCTGCTGTAAATCACCTTGGCATTGACAAGGCTGTACCCAAAAAAATTCTTGATATGATGAATGTCGAAAATATAACAAGGGAGAACGTGGCTAGCCATCTCCAGAAGTATAGACTTTATCTGAAAAGAATTAGCTGTGTGGCAAACCAACAAGCTAGTATGGTGGCGGCCTTAGGGAGTGCGGATCAATCTTATTTGAGAATGGGTGGTTCTGGACATTTTCACAATAATGCTTTCAGATCTTTTTCACCTAGTGGGATAATTAGTAATCTGAACACTCCAGCTGGTCTTAATGGACATGGATTTTCTCCATCCGGACTACTTCAGTTGGGCCAATCACAAAATTTAAACAATTCTTCCAATGATCAATTTAAATTCCAGTCGGCCATAACTCCTGTTAATCAGAATATTCTTCAGGGTATGCCAATGTCTATAGGGTATGATCACTTGCAAAACAGCAAGGGTGTTATATCTGTTCAAAGCTTGAATACTGATGTAAAACCAAGTTTTCCCATCCCAAGTCAATTCCCGGATCAAAGACCCAGAGTAACTGCCTCTAGTTTTCATCCTCCAAGTCTCGGTATCTCAAACAATGCCTTGATGTCAGAAACACACCCGGAAGGAAAACGAGGTATAGGAATAGGATATGAAAGTTCATCATCTTCTTCATTAGCCTCTCAACATTCAGAATTTTCTTTCAGTATGCTGGATCAAGGTAGGCGTAGTGATAATTGGTCAAATGCTGGACAGTTATCTGGGATCCAGACAAATTCTTTTCCTTCAAGTGAATGTTTTAGACAAACAGCTATTCCTCCTTCAGATAACATGGCTTCTTTGCCCTTGCAAGGGGTGTATCCTGGTGGTCAAACTCATGGTTCATTGGCAGATATGCACTCCCAAGGAGGGATTTTTACTAATCCACCTGAGTACATAAACAGTAATTTACCGTTTCAAGGATGGGAAGACCATAATCAGGATGCTTCTTACCACTCAAATGTTACTTGTGGAACAATTAACTCTCTCCCTCCAGTTAACGGTGCTGTTGTTCCCCCAGGCCAAACACCAACAAACTCGACCTTGCACAGAAGCATGGACACTAAGTTTTGTGATTCCATACAAATGAAGCATGCTGGATTCGCTGAATGCTCCTCATCGAGACAACCTCGAGCGAATATCGTTAACCAGCAGCAGTTTTCTAATAATCTCGGTTCACTGGAATACTTGGCGAGTTCAATGATGGAACAGGAGCAAGATAAGATGAAATTAATGGGTGGAGACTTCATATGCGATAACTACTCTGGCGGGGTATCTTTGTGA 1953 0.4245 MDDSTDLFPIGMRVLAVDDDPTCLRVLETLLRRCQYHVTTTSQAITALTMLRENKDKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSAYGDTKLVMKGISHGACDYLLKPVRLEELKNIWQHVIRKKKSDSKGKNKTSKPDNATSDSGSGLRSAGTENSDENGKLTKKRKDQDEDEDEDKENGNDNEDPSAQKKPRVVWSVELHRKFVAAVNHLGIDKAVPKKILDMMNVENITRENVASHLQKYRLYLKRISCVANQQASMVAALGSADQSYLRMGGSGHFHNNAFRSFSPSGIISNLNTPAGLNGHGFSPSGLLQLGQSQNLNNSSNDQFKFQSAITPVNQNILQGMPMSIGYDHLQNSKGVISVQSLNTDVKPSFPIPSQFPDQRPRVTASSFHPPSLGISNNALMSETHPEGKRGIGIGYESSSSSSLASQHSEFSFSMLDQGRRSDNWSNAGQLSGIQTNSFPSSECFRQTAIPPSDNMASLPLQGVYPGGQTHGSLADMHSQGGIFTNPPEYINSNLPFQGWEDHNQDASYHSNVTCGTINSLPPVNGAVVPPGQTPTNSTLHRSMDTKFCDSIQMKHAGFAECSSSRQPRANIVNQQQFSNNLGSLEYLASSMMEQEQDKMKLMGGDFICDNYSGGVSL* 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0741 650 PANTHER TWO-COMPONENT RESPONSE REGULATOR 2 630 IPR045279 GO:0009736
Psa5g0741 650 MobiDBLite consensus disorder prediction 165 179 - -
Psa5g0741 650 Pfam Myb-like DNA-binding domain 200 250 IPR001005 -
Psa5g0741 650 Gene3D - 11 147 - -
Psa5g0741 650 Gene3D - 194 257 - -
Psa5g0741 650 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 195 254 IPR017930 -
Psa5g0741 650 Pfam Response regulator receiver domain 14 122 IPR001789 GO:0000160
Psa5g0741 650 ProSiteProfiles Response regulatory domain profile. 13 128 IPR001789 GO:0000160
Psa5g0741 650 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 198 251 IPR006447 GO:0003677
Psa5g0741 650 PIRSF RR_ARR_type-B 1 648 IPR017053 GO:0003677|GO:0003700|GO:0009736
Psa5g0741 650 SUPERFAMILY CheY-like 11 132 IPR011006 -
Psa5g0741 650 CDD REC_typeB_ARR-like 14 128 - -
Psa5g0741 650 SUPERFAMILY Homeodomain-like 196 255 IPR009057 -
Psa5g0741 650 MobiDBLite consensus disorder prediction 144 164 - -
Psa5g0741 650 SMART REC_2 12 124 IPR001789 GO:0000160
Psa5g0741 650 PANTHER TWO-COMPONENT RESPONSE REGULATOR 2 630 - -
Psa5g0741 650 MobiDBLite consensus disorder prediction 131 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0741 Psa-Chr5 60135245 60138257 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0741 3 420 Response Regulator Gene Family AT2G25180 51.927 1.04e-129 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Psa5g0741 Response_reg 2.8e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0741 - K14491 gmx:100809002 850.506