LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa5g0713	ATGGATGATCTCACGTATCATTTCAATGACCCTTATGAAACTTCCATTGATCTAAGTTTCTTCAATACAAGTAACCCCACACTAGCCGATTTATCCATCACTGACAATGCACCCCACCAAAATCATCATGGAGTATTTCAACAGCCACATGATACTAACTTTAACAATCATTTTTCCAACCATAATGGATTACTTCAACAAGGACATGGTACTAATGATGATTTCGCAATGTCTCAAAACAATTCATTTGATTACAATGTAATGTCATCTCATCCAAATGTAATGCAAGTGCAATATGATCATCAGCCAAATAATTTTTCCTTTGAACGAAATGACTTCGAAGCGGGTACTTCGTCACAAATGCATGAGGATCAACAAACTCAACCTATGAATCAGATTCCGGTTTCGATGAACCAAACCGATGCAATGACACTTGATCAATGGCCACCAACACCAATTCCATATTTTTGCAGTTGTTGTCAAGTACTCAGAGAAATCATCCACGCTAATGGTATTCAATTTGAAAAGCTTGAGATTCATGGAAGGTTGGGTTTGATTACACATGCAATTCATCATCAGACACCTGTTAATGGAGACCTACCAATTAGTCAGATGATTGATTTTAGCAGAAGAAGCCTTGATGAAATAAAGAATTTTCTGGCGCAATACTGCATGCAGCATATTTTAGAAGGATACTTTATTCTACAAGATCCTATGTCTGCATATTATGAAACTCTTTGCACTGGATTGGATTGGATTGAAGATTTTAACATGGAGGGTCCTGTTGATAACAATCAAAACAATTCAGATGAAATGGTGGAGCAAGAGCAAGTTGGTGAGGATGGAACTCCTACTACTGAAACACCTGATAAAAAGAACCTCTCAGAACAGAGAGAAAAAGCGGGAAAATTGACATTGAATGATTTACGCGATTATTTTCATCTACCTATTGAGGAAGCAGCGAAAAAAGTGGACTTGTGTCCGACAGTTCTTAAGAAAACATGTCGTAAAGCAGGATTAGCAAGATGGCCTCACAGAAAGGTGAAAAGCCTTTTGAAGCAGATAGCATTACTAGGAACTCAATTGGAAAAGCAAGAAGCAGCGACAAGGGCGAGGACTGAAAGGGAAATTAGCAGGCTTAAGCAAGAAATGATTGATCATTGTGGTGGACATATACCAACAGCGATGTATAACATCGCCGACTTCTTGCCACCAAACTATCAGAAGCGCCGGTAG	1236	0.3867	MDDLTYHFNDPYETSIDLSFFNTSNPTLADLSITDNAPHQNHHGVFQQPHDTNFNNHFSNHNGLLQQGHGTNDDFAMSQNNSFDYNVMSSHPNVMQVQYDHQPNNFSFERNDFEAGTSSQMHEDQQTQPMNQIPVSMNQTDAMTLDQWPPTPIPYFCSCCQVLREIIHANGIQFEKLEIHGRLGLITHAIHHQTPVNGDLPISQMIDFSRRSLDEIKNFLAQYCMQHILEGYFILQDPMSAYYETLCTGLDWIEDFNMEGPVDNNQNNSDEMVEQEQVGEDGTPTTETPDKKNLSEQREKAGKLTLNDLRDYFHLPIEEAAKKVDLCPTVLKKTCRKAGLARWPHRKVKSLLKQIALLGTQLEKQEAATRARTEREISRLKQEMIDHCGGHIPTAMYNIADFLPPNYQKRR*	412

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa5g0713	411	Pfam	RWP-RK domain	303	351	IPR003035	-
	Psa5g0713	411	PANTHER	RWP-RK DOMAIN PROTEIN	46	389	-	-
	Psa5g0713	411	PANTHER	PROTEIN RKD4	46	389	IPR044607	GO:0003700
	Psa5g0713	411	Coils	Coil	363	383	-	-
	Psa5g0713	411	MobiDBLite	consensus disorder prediction	271	298	-	-
	Psa5g0713	411	ProSiteProfiles	RWP-RK domain profile.	285	371	IPR003035	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa5g0713	Psa-Chr5	57216050	57218156	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa5g0713	265	371	AtRKD Transcription Factor Family	AT4G35590	33.929	6.00e-12	64.3

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	RWP-RK	Psa5g0713		RWP-RK	6.3e-21	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa5g0713	-		-	cam:101503746	526.939