Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0672 ATGGATAATGGAAATTTGGTTTTGCTTGGGGATGATAACAGTACGGTGATTTGGCAAAGTTTTGATTTTCCGACGGATACTTTGTTGCCTCAACAGGTTTTCAAAGAGGGGATGAAGCTTACTAGTGAACCTGGTTCGAATAGTTTGACCTATGTTCTTGAGATTAAATCTGGTAATGTTGTTCTTTCTGCTGGTTTTAGAATACCACAGGTTTATTGGACTATGCAAAAGGATAACCGGAAGACGGTTGATAAGGATGGCGAAGTTGTGGTTTCGGCGAATCTCAGTGATAATTCTTGGAGATTTTATGATGAGAACAAGTCTTTGTTGTGGCAGTTTATTTTCTCTGCTGATGCAGGTGTTAATGCGACATGGATTGCTGTTTTGGGATGGGATGGTGTTATTAGTTTCAAGAATCTCAACAGTGGTGGATGGAACGGTGATTCTCCGACCAGGATACCGCAGGATCCTTGTGGTACACCGGAGCCTTGTGATCCTTACAGCATATGCACGGATAATCAAAGTCGCAGATGTAGCTGTCTTTCTGTTGTTCCGAGTTGTAAACCTGGTTTTGTTTCTCCTTGTGATGATGGTAAACCAGAAAAATCTATTGAACTTCTGAAAGGTGATGATGGAATTAGTTACTTTGCTCTTGATTATCTTAAGCCGTTTTCAAAAACTGATTTGGCTGGGTGTCAAACGTCGTGCCGTGGAAATTGCTCTTGTCTTGCAATGTTCTTTCATAAAAGTTCGGGAAACTGTTTCCTGTTAGAAAGTGTAGGAAGTTTTCAGAAATCTGATAATGGTGATTCTGGTTATATTTCATACATTAAGGTATCAAGTGATGGAGGCGATAACGGAAGTGGAGTCAAACCTACACACATCATTGTTATTGTTGTTATTGTCATATTGACTTTGTTTGTGATTTCTGTTATGATCTGTGTTGGGGTTAGATACTACAGGAAAAAGAAAAGGTTACCTGAATCTCCAAGAGAGAATTCAGAAGAGGACAATTTCTTAGAGAATTTAACCGGTATGCCGATCCGTTACCGTTACAAAGATCTCGAAGTTGCTACTAATAACTTCTCAGTGAAGCTCGGTCAAGGAGGTTTTGGTTCAGTTTATAAAGGAGTTCTACCTGACGGAACTCAATTAGCCGTGAAGCAATTGGAAGGTATCGGTCAAGGGAAGAAAGAGTTCAGAGCTGAAGTTAGCATCATCGGAAGCATTCATCATCTTAATTTGGTAAGGCTTAAAGGATTTTGCGCAGATGGAACTCACAGGCTTTTAGTTTACGAGTATATGGCTAATAACTCATTGGACAAATGGATATTCAAGAAGAAAAAAAGCGAATTTCTTTTGGATTGGGATACAAGGTATAACATAGCAGTAGGAACAGCGAAAGGGCTAGCGTATCTGCACGAAGATTGCGACTCAAAGATTGTTCATTGCGACATCAAGCCAGAAAACGTACTCCTAGACGATCATTTCATGGCTAAAGTTTCAGATTTCGGTTTAGCCAAGCTCATGAACCGAGAACAAAGCCATGTCTTCACAACGCTAAGAGGAACACGGGGCTACCTCGCACCAGAATGGATAACAAACTACGCTATATCAGAGAAAAGCGACGTATACAGCTACGGAATGGTGTTGCTAGAGATTATCGGCGGAAGGAAAAACTACGATACTAACGAGACTTCGGAGAAAAACTATTTCCCTAGTTTTGCTTTCAAGATGATGGAGGAAGGGAAAACGAGAGATATACTTGACTCTGAGCTGAAAATTGATGAGCATGATGATAGGGTTCATTGTGCTATAAGGGTTGCATTGTGGTGTATACAAGAAGACATGTCAATGAGACCATCAATGACAAAGGTTGTTCAAATGTTGGAGGGTCTTTGTACGGTTCCTAAACCACCAACTAGTTCTTATTTGGGTTCTAGGCTTTATTCAACTGTGTTTAAATCATCTAGTGAAGGAGGAAATTCTTCTGGTCCATCAGATTGTAATAGTGATGCTTATCTTTCAGCAGTTCGTCTTTCTGGTCCAAGATAA 2055 0.4019 MDNGNLVLLGDDNSTVIWQSFDFPTDTLLPQQVFKEGMKLTSEPGSNSLTYVLEIKSGNVVLSAGFRIPQVYWTMQKDNRKTVDKDGEVVVSANLSDNSWRFYDENKSLLWQFIFSADAGVNATWIAVLGWDGVISFKNLNSGGWNGDSPTRIPQDPCGTPEPCDPYSICTDNQSRRCSCLSVVPSCKPGFVSPCDDGKPEKSIELLKGDDGISYFALDYLKPFSKTDLAGCQTSCRGNCSCLAMFFHKSSGNCFLLESVGSFQKSDNGDSGYISYIKVSSDGGDNGSGVKPTHIIVIVVIVILTLFVISVMICVGVRYYRKKKRLPESPRENSEEDNFLENLTGMPIRYRYKDLEVATNNFSVKLGQGGFGSVYKGVLPDGTQLAVKQLEGIGQGKKEFRAEVSIIGSIHHLNLVRLKGFCADGTHRLLVYEYMANNSLDKWIFKKKKSEFLLDWDTRYNIAVGTAKGLAYLHEDCDSKIVHCDIKPENVLLDDHFMAKVSDFGLAKLMNREQSHVFTTLRGTRGYLAPEWITNYAISEKSDVYSYGMVLLEIIGGRKNYDTNETSEKNYFPSFAFKMMEEGKTRDILDSELKIDEHDDRVHCAIRVALWCIQEDMSMRPSMTKVVQMLEGLCTVPKPPTSSYLGSRLYSTVFKSSSEGGNSSGPSDCNSDAYLSAVRLSGPR* 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0672 684 Pfam Protein kinase domain 364 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g0672 684 ProSitePatterns Protein kinases ATP-binding region signature. 366 388 IPR017441 GO:0005524
Psa5g0672 684 Pfam D-mannose binding lectin 1 34 IPR001480 -
Psa5g0672 684 ProSitePatterns Serine/Threonine protein kinases active-site signature. 481 493 IPR008271 GO:0004672|GO:0006468
Psa5g0672 684 ProSiteProfiles Protein kinase domain profile. 360 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g0672 684 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 2 684 - -
Psa5g0672 684 SMART serkin_6 360 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g0672 684 Gene3D Transferase(Phosphotransferase) domain 1 435 638 - -
Psa5g0672 684 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 2 684 - -
Psa5g0672 684 Gene3D Phosphorylase Kinase; domain 1 324 434 - -
Psa5g0672 684 CDD STKc_IRAK 366 633 - -
Psa5g0672 684 SUPERFAMILY Protein kinase-like (PK-like) 341 631 IPR011009 -
Psa5g0672 684 SUPERFAMILY alpha-D-mannose-specific plant lectins 2 42 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0672 Psa-Chr5 54367158 54370534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0672 304 642 Receptor kinase-like Gene Family AT5G20050 47.091 5.43e-100 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Psa5g0672 Pkinase 9.4e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0672 - - gmx:100791158 1119.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0672 5 54367158 54370534 Psa5g0672 5 54367158 54370534 ECH
Psa5g0672 5 54367158 54370534 Psa6g0667 6 22784678 22792322 ECH
Psa6g0667 6 22784678 22792322 Psa5g0672 5 54367158 54370534 PCT