Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0665 ATGTCGTCGAACCACTGTTTATCAAGTGCTCGTTTCCTCACTGTCGGAGGAATCCGCTCCTTTCCCTTGCAACGAAAACCCCTTCTCTTCTCCGTCACTCTCTCTTCTCGCTCTCAGAACCTCCAATCCTTAATTGTCACCGCCTCTTCTAAAAAGAAAAGCAAGGAAAAATTGACTCATGTTACAGAGGGGAATGAAGAGGGGGATGCGTTTGAAATGCTCTTCAAGCAACTTGAAGAAGATCTCAAAAACGATGATTTATCCATGGACGATATTGGCGATGAAATATCGGAAGAGGATATGGCTTTGTTAGAACGTGAGTTGGAAGGTGCGTTAGATGATTTTGATGGTGAATTGTTGAACTCAGATACTGCCCAAACACCGGCTGTTAACGAGGCTGAAAAAACCAGCAAGGATGGAAATGATGGCCCGTTGAACCTTAGAACTTGGCAATCGAATAAATTGGCTAGAGCCTTGAAAACCGGACGCCGCAAAACGAGTATAAAAACTCTTGCTGCTGAGCTCTGTCTTGATAGAGCTCTTGTTCTTAGTTTGCTTCGTAACCCTCCTCCGAATCTTCTCATGAGGAGCTTATCGATACCCGATGAACCCACACCATCAGCAATATCCACGCCAGGAGAGAATTTTTATCAAGAAACAAGCACAGATCATGCAGAATCTGTACCAAAGTCCAACTTACCTATTCATACCATGCAAGAGAATTGGTCTTCTCGAAAGCGATTGAAAAAGGCCCATCTTGACACTCTAGAGAGAGTTTACACGAGATCAAAGCGGCCCACTAATACAATGATTAGTAACATTGTGCATGTTACAAACCTTCCGCGGAAAGCAGTTGTCAAGTGGTTTGAAAACAAACGCGCCGAGGACGGAGTTCCAGAACAGCGCCTTCCTTACCAGCACTCTGCTAATGAAACTGCTTGA 942 0.4448 MSSNHCLSSARFLTVGGIRSFPLQRKPLLFSVTLSSRSQNLQSLIVTASSKKKSKEKLTHVTEGNEEGDAFEMLFKQLEEDLKNDDLSMDDIGDEISEEDMALLERELEGALDDFDGELLNSDTAQTPAVNEAEKTSKDGNDGPLNLRTWQSNKLARALKTGRRKTSIKTLAAELCLDRALVLSLLRNPPPNLLMRSLSIPDEPTPSAISTPGENFYQETSTDHAESVPKSNLPIHTMQENWSSRKRLKKAHLDTLERVYTRSKRPTNTMISNIVHVTNLPRKAVVKWFENKRAEDGVPEQRLPYQHSANETA* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0665 313 CDD homeodomain 242 294 IPR001356 GO:0003677
Psa5g0665 313 Gene3D - 240 303 - -
Psa5g0665 313 SUPERFAMILY Homeodomain-like 241 308 IPR009057 -
Psa5g0665 313 SMART HOX_1 241 303 IPR001356 GO:0003677
Psa5g0665 313 MobiDBLite consensus disorder prediction 125 149 - -
Psa5g0665 313 PANTHER HOMEOBOX PROTEIN 8 32 310 - -
Psa5g0665 313 Pfam Homeodomain 244 294 IPR001356 GO:0003677
Psa5g0665 313 PANTHER ZINC-FINGERS AND HOMEOBOXES RELATED 32 310 - -
Psa5g0665 313 ProSiteProfiles 'Homeobox' domain profile. 239 299 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0665 Psa-Chr5 53387620 53389656 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Psa5g0665 Homeodomain 3.1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0665 - - gmx:100784216 369.777
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0665 5 53387620 53389656 Psa5g0665 5 53387620 53389656 ECH