Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0657 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTAGATGTTTACATCCATGATTATCTTGTTAAGCGGGACTTGAAGGTTTCTGCTCAGGCTTTTCAGGCTGAGGGGAAAGTATCCTCGGACCCTGTTGCTATTGATGCTCCAGGAGGTTTTCTGTTTGAGTGGTGGTCGGTTTTCTGGGACATTTTTATTGCCAGGACTAATGAGAAGCACTCCGAGGTTGCTGCGTCGTATATAGAGACTCAATTAGTTAAGGCAAGGGAACAACAACAGCAGCAGCAACCTCAACCGCAGCAGTTGCAACATCAACATCAGCAGCAACAACACATGCAGATGCAACAACTTATGTTGCAGAGACATGCACAACAGCAACAACAGCAGCAACAACAACAACAACAACAACAGCAACATCAGCAGCAACAACAGCCACAATCACAGCAGCAGCAGCCACAACCACAACAACAACAACAGCAAAGTAGGGACAGGGCACATCTCTTAAATGGTAGCGCAAATGGGTTAGGTGGAAACCCAGGAACTGCAAATGCAATAGCAACAAAGATGTACGAGGAAAGGTTAAAAGTTCCCCTTCAGAGGGATTCTTTGGATGATGCAGCAATGAAGCAGAGATTTGGTGAGAACATGGGTCAACTCTTGGACCCAAATCATGCCTCGATATTGAAGTCAGCTGCAACATCTGGTCAGCCTTCAGGGCAAGTTTTGCATGGCGCTGCTGGTGGGATGTCTCCACAAGTTCAAGCTCGTAGTCAGCAATTACCAGGGTCTACAACGGATATGAAGAGTGATATAAATTCTGTTCTAAATCCCAGAGCTGCGGGTCCTGAAGGATCACTTTTAGGAATTTCTGGATCGAATCAAGGAAACAACAATTTGACTTTGAAAGGGTGGCCACTCACAGGTTTGGAGCATCTACGTTCGGGTCTACTCCAGCATCAAAAGCCTTTCATGCAGTCTCCTCAGCCTTTTCATCAACTACAAATGTTGACACCACAACATCAGCAACAACTTATGCTTGCACAACAGAATTTGACATCACCATCCGTAAGTGAAGAAAGTAGAAGGCTGAGAATGCTACTGAATAATAGGAATATGGGCCTAAATAAGGACGGTCTTTCGAACCCTGGGGCTGATGTGTTAACAAATATTGGATCACCTCTTCATGGTGGCGGTCCTCCATTTCCTCGTGGAGATACAGATATGCTAATGAAGGTGCTGCAGCAACAGCAGCAGCATCAACAACAGTCGAGCATCAGTGCACAGCAGCAGCAACTTCAACAGCACACTCTTTCAAATCAGCAGTCTCAGACTTCAAATCATAGCATGCACCAGCAAGATAAAGTAGGGGGAGGTGGTGGTAGTGTCACCATGGACGGTAGCATGTCAAACTCATATAGAGGAAATGATCAGGTTACAAAAAACCAGATTGGAAGAAAGAGAAAGCAGACTGTATCTTCTTCAGGTCCTGCAAATAGTTCAGGAACAGCAAATACAGCGGGTCCTTCCCCAAGAACAGCAAATACAGCGGGTCCTTCCCCAAGTTCAGCACCCTCAACACCCTCAACTCATACTCCTGGAGATGCTATGTCAATGCCTGCTTTGCCTCATAATGGCAATTCTTCGAAGCCTCTAATGATGTTTGGCACTGATGGCACCGGGACTCTTACATCACCTTCAAACCAGTTGGCTGATGTCGATCGCTTTGTGGATGATGGATCTCTAGATGAAAATGTAGAGTCTTTTTTATCGCCAGATGATGCAGACCCTAGAGACCATGTTGGCCGTTGTATGGATGTAAGCAAAGGATTCACATTTTCTGATGTAAATTCTGTACGCGCAAGTTCAAGCAAAGTTGCCTGTTGCCATTTCTCATCTGATGGAAAATTACTTGCAAGCGGTGGACATGACAAAAAGGCTGTTATATGGTACACCGATTCTCTAAAACAAAAAGCTACTCTTGAAGAACATTCATCTTTGATAACTGACGTCCGTTTCAGTCCAACCATGCCGCGTCTAGCAACATCTTCCTTTGACAAAACTGTCAGGGTTTGGGACGTTGACAATCCTGGGTATTCTCTTCGCACATTTACGGGACATTCCACATCTGTTATGTCACTAGATTTTCACCCAAATAAAGATGACCTTATCTGCTCTTGTGATGGTGATGGTGAGATACGGTATTGGAGTATAAACAACGGAAGTTGTGTTAGAGTCTCCAAGGGTGGCACTACCCAGATGAGATTTCAACCTCGTCTAGGGAGGTACCTTGCTGCAGCTGCCGAGAACATTGTGTCTATACTTGACGTGGAGACCCAGGCATGCCGATATTCATTAAAGGGTCATACAAAGACTATAGATTCTGTAAGTTGGGATCCATCCGGGGAGTTGCTGGCATCAGTGAGTGAGGACTCAGTTAGGATTTGGACTCTTGGAACAGGAAATGAAGGGGAATGTGTTCATGAGCTTAGCTGTAATGGCAGTAAGTTTCACTCATGTGTTTTCCATCCAACATATCCTTCACTGCTCGTCATCGGCTGTTATCAGTCAATGGAGCTGTGGAACATGGCTGAGAACAAGACAATGACTTTATCTGCTCATGATGGTTTAATTACTGCCTTGGCGGTTTCAACTGTAAATGGTTTGGTTGCTTCTGCCAGTCATGACAAGTTCATCAAGCTCTGGAAGTTACTTTTGGACTTTTAA 2718 0.4489 MSQTNWEADKMLDVYIHDYLVKRDLKVSAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLVKAREQQQQQQPQPQQLQHQHQQQQHMQMQQLMLQRHAQQQQQQQQQQQQQQQHQQQQQPQSQQQQPQPQQQQQQSRDRAHLLNGSANGLGGNPGTANAIATKMYEERLKVPLQRDSLDDAAMKQRFGENMGQLLDPNHASILKSAATSGQPSGQVLHGAAGGMSPQVQARSQQLPGSTTDMKSDINSVLNPRAAGPEGSLLGISGSNQGNNNLTLKGWPLTGLEHLRSGLLQHQKPFMQSPQPFHQLQMLTPQHQQQLMLAQQNLTSPSVSEESRRLRMLLNNRNMGLNKDGLSNPGADVLTNIGSPLHGGGPPFPRGDTDMLMKVLQQQQQHQQQSSISAQQQQLQQHTLSNQQSQTSNHSMHQQDKVGGGGGSVTMDGSMSNSYRGNDQVTKNQIGRKRKQTVSSSGPANSSGTANTAGPSPRTANTAGPSPSSAPSTPSTHTPGDAMSMPALPHNGNSSKPLMMFGTDGTGTLTSPSNQLADVDRFVDDGSLDENVESFLSPDDADPRDHVGRCMDVSKGFTFSDVNSVRASSSKVACCHFSSDGKLLASGGHDKKAVIWYTDSLKQKATLEEHSSLITDVRFSPTMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSTSVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCVRVSKGGTTQMRFQPRLGRYLAAAAENIVSILDVETQACRYSLKGHTKTIDSVSWDPSGELLASVSEDSVRIWTLGTGNEGECVHELSCNGSKFHSCVFHPTYPSLLVIGCYQSMELWNMAENKTMTLSAHDGLITALAVSTVNGLVASASHDKFIKLWKLLLDF* 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0657 905 Coils Coil 112 141 - -
Psa5g0657 905 ProSiteProfiles Trp-Asp (WD) repeats profile. 616 657 IPR001680 GO:0005515
Psa5g0657 905 ProSiteProfiles Trp-Asp (WD) repeats profile. 783 823 IPR001680 GO:0005515
Psa5g0657 905 MobiDBLite consensus disorder prediction 467 529 - -
Psa5g0657 905 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 1 511 - -
Psa5g0657 905 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 509 900 - -
Psa5g0657 905 Gene3D - 746 904 IPR015943 GO:0005515
Psa5g0657 905 Gene3D - 595 745 IPR015943 GO:0005515
Psa5g0657 905 SMART WD40_4 609 648 IPR001680 GO:0005515
Psa5g0657 905 SMART WD40_4 651 690 IPR001680 GO:0005515
Psa5g0657 905 SMART WD40_4 861 900 IPR001680 GO:0005515
Psa5g0657 905 SMART WD40_4 820 859 IPR001680 GO:0005515
Psa5g0657 905 SMART WD40_4 694 734 IPR001680 GO:0005515
Psa5g0657 905 SMART WD40_4 776 814 IPR001680 GO:0005515
Psa5g0657 905 Pfam WD domain, G-beta repeat 697 734 IPR001680 GO:0005515
Psa5g0657 905 Pfam WD domain, G-beta repeat 779 813 IPR001680 GO:0005515
Psa5g0657 905 Pfam WD domain, G-beta repeat 655 690 IPR001680 GO:0005515
Psa5g0657 905 Pfam WD domain, G-beta repeat 863 900 IPR001680 GO:0005515
Psa5g0657 905 Pfam WD domain, G-beta repeat 617 647 IPR001680 GO:0005515
Psa5g0657 905 ProSitePatterns Trp-Asp (WD) repeats signature. 677 691 IPR019775 -
Psa5g0657 905 MobiDBLite consensus disorder prediction 410 455 - -
Psa5g0657 905 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 783 815 - -
Psa5g0657 905 MobiDBLite consensus disorder prediction 410 450 - -
Psa5g0657 905 CDD WD40 616 900 - -
Psa5g0657 905 SMART Lish 8 40 IPR006594 GO:0005515
Psa5g0657 905 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 868 905 - -
Psa5g0657 905 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Psa5g0657 905 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 701 739 - -
Psa5g0657 905 ProSiteProfiles Trp-Asp (WD) repeats profile. 868 901 IPR001680 GO:0005515
Psa5g0657 905 ProSiteProfiles Trp-Asp (WD) repeats profile. 658 693 IPR001680 GO:0005515
Psa5g0657 905 SUPERFAMILY WD40 repeat-like 614 900 IPR036322 GO:0005515
Psa5g0657 905 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 658 693 - -
Psa5g0657 905 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 509 900 IPR044716 GO:0003714
Psa5g0657 905 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 511 IPR044716 GO:0003714
Psa5g0657 905 MobiDBLite consensus disorder prediction 88 162 - -
Psa5g0657 905 ProSiteProfiles Trp-Asp (WD) repeats profile. 701 743 IPR001680 GO:0005515
Psa5g0657 905 Pfam LisH 10 36 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0657 Psa-Chr5 52215746 52223259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0657 695 901 Miscellaneous Gene Families AT5G08390 24.528 7.29e-13 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Psa5g0657 WD40 0.0031 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0657 - - gmx:100816263 1237.25