Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0644 ATGGGTGTGGATTTCTATAATATATTGAAGGTTGAAAAAAATGCTACCGATGATGATTTGAAGAAAGCATATAGAAAATTGGCTATGAAATGGCACCCTGATAAGAACCCTACCAATAAAAAAGAAGCTGAAGCCAATTTCAAACAAATTTCTGAAGCTTATGCGATATTGAGTGATCCTCAAAGAAGGATGCTATATGATCAGCTTGGAGAACAAGGGTTAAAAGATAAGCCGCCGCCGGGAAATGAGTCGTCGAGTAGTTTTAATCGGTCTGCGGAGGATATCTTTACTGAATTCTTTGGGAGTAGTCCTTTGAATTTTGGATCGTCTGGAGCTGGAAGGTCGAAGAGATTCTCGTCTGATGGTGGAGGAAGTGGCCCGTTTGCTGGATTCAGCGGAGATTTTAATTTTCGAACACGCAGCGAAAGAACAACATATATGCCAAAGAAACCGTCACCTGTGGAGACCAAACTGCTTTGTAGTATGGAGGAGTTGTATTCTGGTTCTACTAGGAAAATGAAGATCTCAAGGACTGTAATGGATCCCAATGCATACGGAAGGGAAATAAAAGAAACAGAGGTATTAAGCATTGAAGTAAAGCCAGGATGGAAGAAAGGGACAAAGATTACATTCCCAGATAAAGGGAATCAGCAAATAAATCAGCAACCAGCAGATCTTGTATTTGTGATTGACGAGAAGCCTCATGAAGTGTTCAAGAGAGATGGGAATGACCTTATAGTGAACCAGAGGATAACACTTGCAGAAGCCATTGGAGGAACTTTAATAAATATAAAAACACTCGACAAACGTAACGTGCGCGTTCAAGTGAAAGACATTGTGAGTCCTGGTTATGAGCTTGTTGTTTCTAATGAAGGAATGCCAATAACAAAGGAGCCTGGTCACAGGGGTAATTTGAAGATCATATTCGAGGTTAAGTTTCCTAAGAAATTGACACCAGGACAACGTACTGCACTTAAGAGAGTTTTGGGAGGTTGA 996 0.4056 MGVDFYNILKVEKNATDDDLKKAYRKLAMKWHPDKNPTNKKEAEANFKQISEAYAILSDPQRRMLYDQLGEQGLKDKPPPGNESSSSFNRSAEDIFTEFFGSSPLNFGSSGAGRSKRFSSDGGGSGPFAGFSGDFNFRTRSERTTYMPKKPSPVETKLLCSMEELYSGSTRKMKISRTVMDPNAYGREIKETEVLSIEVKPGWKKGTKITFPDKGNQQINQQPADLVFVIDEKPHEVFKRDGNDLIVNQRITLAEAIGGTLINIKTLDKRNVRVQVKDIVSPGYELVVSNEGMPITKEPGHRGNLKIIFEVKFPKKLTPGQRTALKRVLGG* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0644 331 CDD DnaJ 4 59 IPR001623 -
Psa5g0644 331 Gene3D - 153 233 - -
Psa5g0644 331 CDD DnaJ_C 152 317 - -
Psa5g0644 331 Gene3D - 235 315 - -
Psa5g0644 331 Pfam DnaJ domain 4 67 IPR001623 -
Psa5g0644 331 SUPERFAMILY HSP40/DnaJ peptide-binding domain 153 236 IPR008971 GO:0006457|GO:0051082
Psa5g0644 331 Gene3D DnaJ domain 3 110 IPR036869 -
Psa5g0644 331 SMART dnaj_3 3 62 IPR001623 -
Psa5g0644 331 SUPERFAMILY Chaperone J-domain 3 103 IPR036869 -
Psa5g0644 331 Pfam DnaJ C terminal domain 154 314 IPR002939 -
Psa5g0644 331 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Psa5g0644 331 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Psa5g0644 331 PRINTS DnaJ domain signature 6 24 IPR001623 -
Psa5g0644 331 PRINTS DnaJ domain signature 24 39 IPR001623 -
Psa5g0644 331 PRINTS DnaJ domain signature 42 62 IPR001623 -
Psa5g0644 331 PRINTS DnaJ domain signature 62 81 IPR001623 -
Psa5g0644 331 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 331 - -
Psa5g0644 331 PANTHER DNAJ HEAT SHOCK FAMILY PROTEIN 1 331 - -
Psa5g0644 331 SUPERFAMILY HSP40/DnaJ peptide-binding domain 237 324 IPR008971 GO:0006457|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0644 Psa-Chr5 50696628 50698718 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0644 5 74 C2H2 Transcription Factor Family AT1G74250 36.486 4.22e-09 55.8