Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0642 ATGGCAAACCCTACAACTCATCACGTAATCATCGATATAACAACAACAACGACGACTTCGACGACTTCAATTTCTGAAGCTGCTCCTCCTTCTGTTCATGGCGGTGGTGATGTTGATGTTGTTTCTCGTCAATCTTCAAATTCTAGAAATGAACATCCGCATGCTCCATTGTTTGCCTGGATTCTTGGTTATGCTTCTGGATGTGTTGTTTCGCTTCCTTTGTTGTTGTGGAGATATTTTGCTAGGGAACCAGATTCCGAGTCTCAAAGCTCGACCACCGGTGATGATCCTTCCGGGATTCTGCTTTCGAATCGGACTACAATACAAGGTGAAGAAGATGCTGTCCCTGTTTCATCCAATCAGGCTTCGTCGTTGTTCACGAATACGAGACTCAAGATACTTATGGAATACTTCAAAATTGTCCTAGATTTATTTTTTGCATCATGGTTTGTTCTTGGAAACGTATGGATATTTGGAGGGCATTCATCCGCTAATGAAGCTCCAAACTTATACCGGTTATGTGTAGTGTTTCTTACTTTTAGCTGCATCGGTTATGCATTGCCCTTCATTCTATGCTTAACAATCTGCTGCTGTCTTCCTTGTATAATTTCCACTCTTGGGGTCAATGAGGATCTGGCACAAACCAGAGGTGGAGTTGTTTCCGGAGGAACCGAAAAGGAACGCGTGATCTCCGGAGAAGATGCAGTTTGCTGCATATGCATAGCGAACTATGAAAACGACGATGAATTGAGAGAATTGCCTTGTTCACATCTTTTCCACAAAGATTGCGTAGACAAGTGGTTAAAGATAAATGCATTATGCCCCCTTTGCAAAAGGGAAGTTGGCGGGAATGAAACAGAACCGGTCATCGAGGAAAATGCCAGCCAACAAAGGGGCGAGAGCAGGATTGAGAATAGTCCCAATACCTCATCAGTAATATAG 942 0.4321 MANPTTHHVIIDITTTTTTSTTSISEAAPPSVHGGGDVDVVSRQSSNSRNEHPHAPLFAWILGYASGCVVSLPLLLWRYFAREPDSESQSSTTGDDPSGILLSNRTTIQGEEDAVPVSSNQASSLFTNTRLKILMEYFKIVLDLFFASWFVLGNVWIFGGHSSANEAPNLYRLCVVFLTFSCIGYALPFILCLTICCCLPCIISTLGVNEDLAQTRGGVVSGGTEKERVISGEDAVCCICIANYENDDELRELPCSHLFHKDCVDKWLKINALCPLCKREVGGNETEPVIEENASQQRGESRIENSPNTSSVI* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0642 313 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 46 217 - -
Psa5g0642 313 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 214 304 - -
Psa5g0642 313 MobiDBLite consensus disorder prediction 288 313 - -
Psa5g0642 313 SUPERFAMILY RING/U-box 229 282 - -
Psa5g0642 313 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 214 304 - -
Psa5g0642 313 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 46 217 - -
Psa5g0642 313 Pfam Ring finger domain 237 278 IPR001841 -
Psa5g0642 313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 217 282 IPR013083 -
Psa5g0642 313 ProSiteProfiles Zinc finger RING-type profile. 237 278 IPR001841 -
Psa5g0642 313 SMART ring_2 237 277 IPR001841 -
Psa5g0642 313 MobiDBLite consensus disorder prediction 289 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0642 Psa-Chr5 50658110 50661783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0642 48 282 C3H Transcription Factor Family AT1G80400 48.188 1.94e-91 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0642 - - gmx:100795904 358.607