Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0637 ATGCTTCGCCTTTGGCGTCTCCGTAGAGTCGGTGCCATGTTTGCAAGATTAGAAAAAGACAGATATTATAACTACTTCTGGCTGCGGTGTTTCAAGCTTACATGTGCTACTTTATTTGTCATGCATTTTGCTGCCTGCATTTACTTCTTTATCGCTGACAACTATGTTGAAGACCGAAGCAAAACATGGCTCGGGCTTGTTTCTGACGTTGATAACCAGAGTACCGTGAATTTGTACATAACATCATTGTACTGGTCCATAGCCACACTTTCATCAGTTGGTTATGGTGATCTGCATCCTGTAAATACAAGGGAGATGATATATTGCTTTCTCTATTGCATCGTTAATGTTGGATTTGGCTCATACCTCATTGGAAATATGTCAAATTTAGTTGTTAACTCCACAACAAGAACTATGAAATATAGGGACACAGTGCAAGCTGCCACAAAATTTGCCCACCGGAATAGAGTACCTGTCCACTTGGAAGAACAGATGCTTTCTCATTTGCTTATGAAGTACAGAACTGATGTAGAAGGGGTACAGCAACAAGAGATTATTGATTCCCTTCCAAAAGCTATTCGATCTAGTATCTCATATTGCTTATTCTATAGATTGATGGACGGAGTATACTTGTTTGAAGGAGTGTCCAAAGACCTAATTTTTCAATTGGTCACGGAGATGAAAGCAGAGTATATTCCTCCAAAGCAAGATGTGGTTTTGGATAATGAAGCTCCATCAGACTTTTATCTCTTTGTCACTGGTGGTGCAGAACTTATCAAACATGACAATGGAGGAGAACAGGTTGTTGGCGAGCTAAATGCCGGAGACTTAGTTGGTGAAGTAGGAGTTTTATGTTACAGGCCGCATCCGTATACAGCCCGGACTAAACGATTGAGCCAAGTTTTGCGCTTGAGTCGTACTGCGTTTCTAAATCTTATTTATTCAAGTGTTGGAGATGGGACAGTAATCATGAACAACTTTCTCAATCATTTGCGAAGTTCCACTGTTCCCGGGACGGATGCTATTTTGGTAGACACAGAGGCCATGTTGGCTCGTGGTAAAACAGATCTTCCTATTGGCACATACTTTGCAGCAATCAGAAATGACAATAAAATGTTAGAATGGTTGCTGAGGAATGGCTCAGATCTAACTGAAGCAGACAGGAATGAAAGGACAGCAATGCATGTGGCAGCTTCTAGTGGCAATGAGCATGGTGTAACTTTGCTTCTAAAGTTTGGTGCTGATCCAAATATCAAAGATTTGGATGGAAATATCCCACTATGGGAAGCGATGATTGGTGGACATAAATCAGTCGAGAAAATTCTCATAAAATATGGTGCAAACTTATCTTGTGCCCAAGCAGGGTATTTAGCATACTCTGCAGCTGAGAAAAATAGCATTGAATTGCTTAAGGAACTCATAAAACATGGCGTGGATGTAACAAAACCCAACGAGAATGGAGGAAGCACTGCCCTACACGCAGCAGTAAGTGAAGGCAATACTGAGATGGTGAGGCTACTTTTGGACCAAGGAGCTGATGTTGATAAAAAAGATGATGCTGGCTGGACTCCAAGGGCTTTGGCAGAACATCAAGGCCACGAAGAAATTAAATTGATATTCCAAAATATTAAAGAGAAAAAAGAAGAAGTACCTGATACTCCAATACCAGAAAATGGTAACCTTAATGTGCCTTACATGGGGAAGTTTCGAAGTGAATCTATAAGGCCTGCTGTTCTTGGACCCAAAAAAAGCAGCTTGCTACCACGACCTACTCCTATTCTTGGATCCCAAGAAAGCTTGCTATCGTCACATACTCATGAAGAGCTGCCATGGCTAGATAGTCATCGAAGGCGAAGGGCAAACACCTTTCATAATTCAATTTTCGGGATGCTCTCTGCTGCTAATCGTAGGAAGAAAAGTTTTAAGGTATCTGAAAGCATCGTCACTACTACCGAGAACATGAATGGATTAGTAGCTAGAGTGACACTTAGTTGTCCTGAAAAAGGTGAACATGGTGGAAAGCTTTCTTTTCTACCCAAGTCCCTTAAAGAACTGCTAGACATTGGTGCCAAAAAGTTTAACATCTCACCCACCAAAATTTTGAATAAAGAAGGAGCTTTAATTGACGATATAAATCTTATAAGAGATGGTGATCACCTTATTATTGCTAGTGACTGA 2178 0.4082 MLRLWRLRRVGAMFARLEKDRYYNYFWLRCFKLTCATLFVMHFAACIYFFIADNYVEDRSKTWLGLVSDVDNQSTVNLYITSLYWSIATLSSVGYGDLHPVNTREMIYCFLYCIVNVGFGSYLIGNMSNLVVNSTTRTMKYRDTVQAATKFAHRNRVPVHLEEQMLSHLLMKYRTDVEGVQQQEIIDSLPKAIRSSISYCLFYRLMDGVYLFEGVSKDLIFQLVTEMKAEYIPPKQDVVLDNEAPSDFYLFVTGGAELIKHDNGGEQVVGELNAGDLVGEVGVLCYRPHPYTARTKRLSQVLRLSRTAFLNLIYSSVGDGTVIMNNFLNHLRSSTVPGTDAILVDTEAMLARGKTDLPIGTYFAAIRNDNKMLEWLLRNGSDLTEADRNERTAMHVAASSGNEHGVTLLLKFGADPNIKDLDGNIPLWEAMIGGHKSVEKILIKYGANLSCAQAGYLAYSAAEKNSIELLKELIKHGVDVTKPNENGGSTALHAAVSEGNTEMVRLLLDQGADVDKKDDAGWTPRALAEHQGHEEIKLIFQNIKEKKEEVPDTPIPENGNLNVPYMGKFRSESIRPAVLGPKKSSLLPRPTPILGSQESLLSSHTHEELPWLDSHRRRRANTFHNSIFGMLSAANRRKKSFKVSESIVTTTENMNGLVARVTLSCPEKGEHGGKLSFLPKSLKELLDIGAKKFNISPTKILNKEGALIDDINLIRDGDHLIIASD* 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0637 725 CDD CAP_ED 211 313 IPR000595 -
Psa5g0637 725 Gene3D - 1 133 - -
Psa5g0637 725 ProSiteProfiles KHA domain profile. 660 725 IPR021789 -
Psa5g0637 725 ProSiteProfiles Ankyrin repeat region circular profile. 389 420 - -
Psa5g0637 725 SMART ANK_2a 389 418 IPR002110 GO:0005515
Psa5g0637 725 SMART ANK_2a 453 482 IPR002110 GO:0005515
Psa5g0637 725 SMART ANK_2a 356 385 IPR002110 GO:0005515
Psa5g0637 725 SMART ANK_2a 487 516 IPR002110 GO:0005515
Psa5g0637 725 SMART ANK_2a 422 451 IPR002110 GO:0005515
Psa5g0637 725 SUPERFAMILY cAMP-binding domain-like 136 332 IPR018490 -
Psa5g0637 725 Gene3D - 359 541 IPR036770 -
Psa5g0637 725 SMART cnmp_10 211 328 IPR000595 -
Psa5g0637 725 Pfam Ion transport protein 1 137 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Psa5g0637 725 ProSiteProfiles Ankyrin repeat profile. 422 454 IPR002110 GO:0005515
Psa5g0637 725 SUPERFAMILY Ankyrin repeat 362 541 IPR036770 -
Psa5g0637 725 Gene3D Jelly Rolls 177 335 IPR014710 -
Psa5g0637 725 Pfam Ankyrin repeats (3 copies) 461 536 IPR002110 GO:0005515
Psa5g0637 725 Pfam Ankyrin repeats (3 copies) 363 450 IPR002110 GO:0005515
Psa5g0637 725 Pfam Cyclic nucleotide-binding domain 233 313 IPR000595 -
Psa5g0637 725 ProSiteProfiles Ankyrin repeat profile. 487 519 IPR002110 GO:0005515
Psa5g0637 725 PANTHER INWARDLY RECTIFYING POTASSIUM CHANNEL SUBUNIT 1 724 - -
Psa5g0637 725 ProSiteProfiles Ankyrin repeat region circular profile. 487 519 - -
Psa5g0637 725 Pfam KHA, dimerisation domain of potassium ion channel 660 722 IPR021789 -
Psa5g0637 725 ProSiteProfiles Ankyrin repeat profile. 389 421 IPR002110 GO:0005515
Psa5g0637 725 SUPERFAMILY Voltage-gated potassium channels 2 170 - -
Psa5g0637 725 PANTHER POTASSIUM CHANNEL AKT1 1 724 IPR045319 GO:0005249|GO:0006813
Psa5g0637 725 ProSiteProfiles cAMP/cGMP binding motif profile. 211 330 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0637 Psa-Chr5 50436865 50442880 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0637 1 725 Ion Channels AT2G26650 52.322 0.0 764
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0637 K21867 - gmx:100786870 869.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0637 5 50436865 50442880 Psa5g0637 5 50436865 50442880 ECH