Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0630 ATGGAAGAAACTGAAGGTGTGAATTGTTGTAGTGAAGGTAGAAGCTCTAGTGAGAGTCGACCTCCAAATCCTAATCCATCTATTGCTTCTGCGTATCGGCAATGCAAACGCAATGATCCTGTCGTTTTGCCATGCAGAAACTCCCTTGTTCGTCACGCTTCTCTTCAAACGAAAATGATGTTGTCTGATGTATCTGCTGAGGGTGTCACTGAAGATTTCCTTCCAATGCTTCGTTCTGGAGGATACGCCGATGTTGGGTTCCGGTCAAGTATGGAGGATGTGTATGTTTGTGTGGACCACTTTATGCAGGATCATGGGCTCAACAAACATATAGCTGGACCAAGTGCTTTCTATGGGGTATTTGATGGACATGGCGGAAAGCATGCTGCTGACTTTGCTTGCAACCATTTGCCAAAGTTCATTCTCGAGGATACAAATTTCCCAGTGGATATCGAAAGGATAGTTGCTTCGGCCTTTCTGCAAACAGACAATGCATTTGCGGAAGCTTGCTCTCTGGATGCTGCCCTTGCGTCTGGCACCACTGCATTGGCTACTCTTGTTATAGGAAGGTTGCTGGTGGTCGCAAATGCTGGAGATTGTCGAGCAGTGCTGTGCCGCAGTGGAAAAGCAATTGAAATGTCAAGAGATCATAAACCAGTTTGCATGAAAGAGCAGAGGCGTATCGAGGCATCTGGGGGGTATGTCTATGATGGATATCTTAACGGACAACTTAGTGTCACTCGAGCTATTGGTGACTGGCACATGGAAGGAATGAAAGGCAAAGATGGAGGACCACTCAGTGCAGAGCCTGAACTCATGACGACAAAACTTACTGCCGAGGACGAATTTCTCATCATAGGCTGTGATGGGATTTGGGATGTTTTTAGAAGCCAAAATGCTGTAGATTTTGCCCGGCGTAGGCTTCAGGACCATAACGACCCAGCCGTGTGTAGTAAGGATCTGGTTGACGAGGCTTTGAAGAGAAAAAGTGGAGACAATTTAGCCGCTGTTGTGGTTTGTTTCCAGCAACAGCCACCACCAAATTTGGTAGCACCGCGCGGCAGAGTGCACAGGAGCTTCTCTGCTGAAGGTTTGAAGGAGTTGCAAAGCTTTTTGGATAGTTTGGGGAAATGA 1134 0.47 MEETEGVNCCSEGRSSSESRPPNPNPSIASAYRQCKRNDPVVLPCRNSLVRHASLQTKMMLSDVSAEGVTEDFLPMLRSGGYADVGFRSSMEDVYVCVDHFMQDHGLNKHIAGPSAFYGVFDGHGGKHAADFACNHLPKFILEDTNFPVDIERIVASAFLQTDNAFAEACSLDAALASGTTALATLVIGRLLVVANAGDCRAVLCRSGKAIEMSRDHKPVCMKEQRRIEASGGYVYDGYLNGQLSVTRAIGDWHMEGMKGKDGGPLSAEPELMTTKLTAEDEFLIIGCDGIWDVFRSQNAVDFARRRLQDHNDPAVCSKDLVDEALKRKSGDNLAAVVVCFQQQPPPNLVAPRGRVHRSFSAEGLKELQSFLDSLGK* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0630 377 Gene3D - 62 345 IPR036457 -
Psa5g0630 377 ProSiteProfiles PPM-type phosphatase domain profile. 78 341 IPR001932 -
Psa5g0630 377 MobiDBLite consensus disorder prediction 1 25 - -
Psa5g0630 377 SMART PP2C_4 68 339 IPR001932 -
Psa5g0630 377 Pfam Protein phosphatase 2C 86 333 IPR001932 -
Psa5g0630 377 SUPERFAMILY PP2C-like 73 343 IPR036457 -
Psa5g0630 377 MobiDBLite consensus disorder prediction 9 25 - -
Psa5g0630 377 PANTHER PROTEIN PHOSPHATASE 2C 67 363 IPR015655 GO:0004722|GO:0006470
Psa5g0630 377 CDD PP2Cc 78 341 IPR001932 -
Psa5g0630 377 ProSitePatterns PPM-type phosphatase domain signature. 117 125 IPR000222 GO:0043169
Psa5g0630 377 PANTHER PROTEIN PHOSPHATASE 2C 27-RELATED 67 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0630 Psa-Chr5 50248584 50251374 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0630 1 376 PP2C-type Phosphatase Gene Family AT2G25620 66.582 0.0 523
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Psa5g0630 PP2C 4.1e-68 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0630 K14803 - gmx:100804558 602.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0630 5 50248584 50251374 Psa5g0630 5 50248584 50251374 ECH