Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0626 ATGCAATTCAAATCAACGCAATCCTCATTTCGAGATCGCACACATGAATTCCACACCGTTGCAGAGAGGTTGAAGAAATCACTACCATCAACCTCAAATGGAGCCACCAGTAGTACTCATCCACCTTCTTCATCTTCTCCTCCGTCTTCCTCTTCTTCTTCCAGATCCGACGATCCTCGATCCGCCGTTGCGATTCAATCAGAGTTTAATCGAAGAGCTTCCAAGATTGGATATGGAATTCATCAAACCTCGCAGAAACTTTCCAAGCTCGCAAAATTGGCGAAAAGGACTTCGGTTTTTGATGATCCAACCATGGAAATTCAAGAACTAACAAGTGTTATTAAACAAGATATTACCGCACTTAACTCTGCGGTTGTGGATCTTCAATTGGTCAGTAACTCTAGAAATGAGAGTGGAAATGTTTCTACCGACACAACTAGTCATTCCACTACGGTTGTGGATGATTTAAAGACTCGATTGATGAGCACCACGAAAGAGTTTAAAGATGTTCTCACCATGAGAACTGAGAACTTGAAAACGCATGAGAGTAGAAGACAATTGTTTTCGTCGAATGCTTCTAAGGATTCTGCAAATCCTTTCATTCGTCAACGTCCTTTAGCTACAAAGTCTGCTGCTAGTACTTCTAATGCTCCTGCACCTCCATGGGCTAGTGGGAAGCAGGTGGATGGGGAGAGTCAACCATTGCTGCAACAACAACAGCAGCAACAACAACAGGTAGTTCCATTGCAGGACACTTACATGCAAAGCAGAGCTGAAGCTCTTCAAAATGTCGAGTCCACTATTCACGAGCTCGGCAGCATCTTTAATCAACTAGCAACACTTGTCTCCCAGCAAGGAGAGATTGCCATCAGGATTGATGAGAACATGGATGATACGTTGACAAATGTAGAGGGGGCACAAGGTGCTTTGTTGAAGTATCTGAATAGCATATCTTCTAATAGGTGGCTGATGATCAAGATTTTCTTTGTCTTGATGTTTTTTCTTATGGTTTTCTTATTTTTTGTGGCGTAG 1032 0.4254 MQFKSTQSSFRDRTHEFHTVAERLKKSLPSTSNGATSSTHPPSSSSPPSSSSSSRSDDPRSAVAIQSEFNRRASKIGYGIHQTSQKLSKLAKLAKRTSVFDDPTMEIQELTSVIKQDITALNSAVVDLQLVSNSRNESGNVSTDTTSHSTTVVDDLKTRLMSTTKEFKDVLTMRTENLKTHESRRQLFSSNASKDSANPFIRQRPLATKSAASTSNAPAPPWASGKQVDGESQPLLQQQQQQQQQVVPLQDTYMQSRAEALQNVESTIHELGSIFNQLATLVSQQGEIAIRIDENMDDTLTNVEGAQGALLKYLNSISSNRWLMIKIFFVLMFFLMVFLFFVA* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0626 343 MobiDBLite consensus disorder prediction 1 62 - -
Psa5g0626 343 MobiDBLite consensus disorder prediction 9 23 - -
Psa5g0626 343 MobiDBLite consensus disorder prediction 25 62 - -
Psa5g0626 343 MobiDBLite consensus disorder prediction 207 221 - -
Psa5g0626 343 Pfam SNARE domain 287 339 IPR000727 -
Psa5g0626 343 SMART tSNARE_6 246 313 IPR000727 -
Psa5g0626 343 ProSitePatterns Syntaxin / epimorphin family signature. 257 296 IPR006012 GO:0005484|GO:0006886|GO:0016020
Psa5g0626 343 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 251 313 IPR000727 -
Psa5g0626 343 Gene3D - 63 306 - -
Psa5g0626 343 MobiDBLite consensus disorder prediction 184 198 - -
Psa5g0626 343 SUPERFAMILY t-snare proteins 67 306 IPR010989 GO:0016020|GO:0016192
Psa5g0626 343 PANTHER SYNTAXIN 2 342 IPR045242 -
Psa5g0626 343 MobiDBLite consensus disorder prediction 181 200 - -
Psa5g0626 343 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 8 26 IPR021538 -
Psa5g0626 343 MobiDBLite consensus disorder prediction 207 242 - -
Psa5g0626 343 CDD SNARE_syntaxin5 254 327 - -
Psa5g0626 343 PANTHER SYNTAXIN-32-LIKE 2 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0626 Psa-Chr5 49976562 49982276 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0626 1 343 SNARE and Associated Proteins AT3G24350 62.400 2.34e-143 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0626 K08490 - gmx:100777961 467.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0626 5 49976562 49982276 Psa5g0626 5 49976562 49982276 ECH