Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0621 ATGAGTAGAGTAAGCAGCAGTACATTGCGTGCCAAAGGCGGAGAGCTTCCACCCAGAATTACGAGATCAAGGGCGAGGGTTTTGGAGTCTTGTTGTGAGAATGAAGGGAAGAATGTTAACAGAGCTGTGAGTTCTAAAAGAGGTGTTTCTTCTGAGAATAAGACTTGTGTGGTTGTTCCTGATGTTCCTAGCCGGAAGAGAAGGGCAGGGCTTACAGATGTTACTAACATCGGTGCAAAACCGCGTGATAAGCGTGTTAAACAGTCTCAGTTTCAGGCCAAAGAAGTTTACCGAAAGAAAAACACAAAGCTAACTTCAGATGTCTCCGTTGAAGTTTCTTCAGCACAAGGGGGTGGTAAAGCAATGGTAGGGTCGAATGACACTATTGCTGCTGTAACTTTGGATGAAGAGCCAACTGGACATTGTATGTCCGACAACATTCGAGAACATGTTATGACAGACACTGCACTCTCGATGCAAGAATCTGTGAACTCTGGTGAACTTCAAACCTCTTCAAGTCCAAACACAGATATAAATATTATTTGTGAGAAGCCAGGAGCCTCAGATTGCTTGACCGTTGTGGACATTGATAAAGAGTTAAAGGATTCTCAAGTTTGGAGTGATTATGCCCCCGATATTTACTGCAAAGCACGAGTAACTGAGCTTGAAAAAAGGTCATCAACCAATTACATGGAGAGATTGCAGCAAGATATTTCTCCAAGCATGCGCGGGATTCTGATTGATTGGCTTGTGGAGGTTTCGGAGGAATACAAGTTGGTTCCAGACACTCTATACCTTACCGTTAACCTCATTGATCGGTTTCTCTCGACATGTTTGATTCAGAAACACAAGCTTCAATTGCTTGGCGTTACTTGTATGTTCATTGCATCAAAGTACGAAGAGATTTGTGCTCCTCGAGTGGAAGAATTTTGCTTCATCACAGATAATACATACACAAAAGCAGAGGTAGTGAAAATGGAGAAGGAAGTTCTTAACCTTCTGCGCTTTCAGTTATCTGTTCCCACAACCAAAACTTTTCTCAGGAGATTCATTCAAGCAGCACAATCTTCTTACAAGGATCCTCGTGTTGAACTGGAATTCCTGGCAAATTATTTAGCAGAGCTTACTCTTGTTGAATACAGCTTCTTACAGTTTCTACCTTCTCTTGTGGCTGCTTCTGCTGTATTCCTTGCGAGATGGACCCTCAACCACTCGGAACATCCATGGACTCCAACTCTGGAGCATTATACAAACTGCAAAGCTTCAGAGCTAAAAACCGTCGTTCTTGCAATGAAAGATCTGCAGCTTAATACCAAAGGTTGTTCCCTCAATGCTATTCGTGAGAAATATAAACACGAGAAGTTCAACTGTGTGGCAAACCTATCTCCCAAACCGGTGCAGTCATTGTTCTAG 1413 0.4275 MSRVSSSTLRAKGGELPPRITRSRARVLESCCENEGKNVNRAVSSKRGVSSENKTCVVVPDVPSRKRRAGLTDVTNIGAKPRDKRVKQSQFQAKEVYRKKNTKLTSDVSVEVSSAQGGGKAMVGSNDTIAAVTLDEEPTGHCMSDNIREHVMTDTALSMQESVNSGELQTSSSPNTDINIICEKPGASDCLTVVDIDKELKDSQVWSDYAPDIYCKARVTELEKRSSTNYMERLQQDISPSMRGILIDWLVEVSEEYKLVPDTLYLTVNLIDRFLSTCLIQKHKLQLLGVTCMFIASKYEEICAPRVEEFCFITDNTYTKAEVVKMEKEVLNLLRFQLSVPTTKTFLRRFIQAAQSSYKDPRVELEFLANYLAELTLVEYSFLQFLPSLVAASAVFLARWTLNHSEHPWTPTLEHYTNCKASELKTVVLAMKDLQLNTKGCSLNAIREKYKHEKFNCVANLSPKPVQSLF* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0621 470 SMART cyclin_7 248 332 IPR013763 -
Psa5g0621 470 SMART cyclin_7 345 433 IPR013763 -
Psa5g0621 470 Gene3D - 212 460 - -
Psa5g0621 470 Pfam Cyclin, N-terminal domain 212 339 IPR006671 -
Psa5g0621 470 SUPERFAMILY Cyclin-like 202 338 IPR036915 -
Psa5g0621 470 PANTHER CYCLIN-A2-4 46 470 - -
Psa5g0621 470 Pfam Cyclin, C-terminal domain 341 463 IPR004367 -
Psa5g0621 470 CDD CYCLIN 242 331 IPR013763 -
Psa5g0621 470 ProSitePatterns Cyclins signature. 243 274 IPR006671 -
Psa5g0621 470 SMART Cyclin_C_2 341 464 IPR004367 -
Psa5g0621 470 Gene3D - 226 339 - -
Psa5g0621 470 MobiDBLite consensus disorder prediction 1 21 - -
Psa5g0621 470 CDD CYCLIN 339 431 IPR013763 -
Psa5g0621 470 PANTHER CYCLINS 46 470 IPR039361 -
Psa5g0621 470 PIRSF Cyclin_A_B_D_E 23 469 IPR039361 -
Psa5g0621 470 SUPERFAMILY Cyclin-like 340 463 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0621 Psa-Chr5 49295690 49300641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0621 19 470 Core Cell Cycle Gene Families AT5G25380 50.540 1.80e-137 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0621 K06627 - gmx:547780 600.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0621 5 49295690 49300641 Psa5g0621 5 49295690 49300641 ECH