Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0611 ATGGCGGTTTCTCCGTCCGTCGCTACTAGTACTACTCCGGCTTCTCTTTACGTCGGCGACCTTCATCCCGAACTCTCCGACGCTCAGCTTCGTGAAGCGTTCTCCTATTTCAATAGTCTCGTTTCCGTTCGCATTTGCAGAGACTCTTCCACCGGAAACTCACTCTGTTATGGCTATGTCAACTTCCTCTCTCCTCAAGACGCAATTCGTGCGATTGAGCTGAAGAATCATTCTATCTTGAATGGAAAAGCGATGAGGGTCATGTGGTCCCGTCGTGATCCTGATGCAAGGAAAAGTAGCATAGGGAACGTGTTTGTTAAGAACTTAGCTCAATCTATAGATGATTTTGTACTAGAAGATATGTTTGAAAAGTATGGGAATATTTTGTCGAGCAAAGTTGTCGTGACTGAGGATGGGAAGAGCAAAGGATATGGCTTTGTTCAATTTGAAACAGAGGAATCTGCAAATACTGCTATTGAGAACCTGAATGGCTCTGTTATCCATGATAAGCAGATATATGTTGGGAAGTTTGTCAAGAAAAGTGACCGCGTAATGTCTGGCCCTGATGCTAGATATACAAATCTGTACGTGAAGAATTTGGACTTAGATATTACAGAAACACTTCTGCAGGAAAAGTTTTCCTCTTTTGGGAAAATCATTAGCTTGGCTATTGCAAAGAACAACAATGGGATGTCAAGGGGTTTTGGCTTTGTGAACTTCGATAAACCAGATGATGCTAAACGGGCAATGGAAGCAATGAATGGATTGCAACTTGGTTCAAAGATTCTGTATGTATCCAGGGCACAGAAGAAGGCTGAGCGTGAGCAGATCTTGCATCAGCAGTTCGAAGAGAAACGAAAGGAACAAGTCTTGAAATATAAGGGCTCAAATATCTACGTGAAGAATATCAATGACACTGTAAGTGATGAAGGACTGCGGGGTCATTTTTGTGCATGCGGCACTATAACTTCTGCAAAAGTTATGCGAGATGACAAAGGGATAAGCAAAGGATTTGGTTTTGTGTGCTTTTCCACTCCTGAGGAAGCAAATAAAGCTGTGAACACTTTTCATGGATTCATGTTCCATGGTAAACCACTATATGTGGCTCTTGCTCAGAAGAAAGAGGTTAGACAGGCTCAGTTGCAGCTCCAGTACGGACAACAAATTCCAGGATTAGCTGGGCCATCAACTGCCATTGTCCCTGGGGGATATCCCCCTTTCTACTACCAAGCTACTGGTGTTGTTTCACATGTGCCTCCTCGGGCTGGGCTAATGTATCAGCCAATGCCATTGAGGCCGGAATTGAGAGCTAATGGCTCTGCACCTCCTGCTAGATCATTCCAACAGTCACCTGCACCTGTTGTTTCTAACAATACTAGGCAGCATAGGCAAAATAGGGTCAGGATGAATGGCCATGCAGTATCACAGGGAAAGACTCACGGTACATTTATGCCACAAACCCAGCAGGCTTCTCAGCCTGCGATACCTTTAAGAGAGTCAAGTACTCAGCAGAAAACCAGACAGGCGAAGTATGTACCTAGTGGACGCCCCCATGAGATGGAAAAACGATCTGGATTTTCATCTGGTTGTTCAAACTCTGGTAGAGGCTTACAAGTATCAGAAATGCTGCATCTCATGGTTGCCAAATCTACTCCAGAGCAGCGGAAAGAGATACTTGGTGAGCATCTATACTTGCTTGTCCAGAAAATCAAGCCTAACCAGGCAGCAAAGATTACTGGCATGCTATTGGAGATGGACAGTGCTAAACTGCTGGTCCTCATGGAATCACCAGAGTCTCTTTCTGCCAAGGTGGAAGAAGCTTTCCAGCTGCTGAAGAATTCTAAAGCTAAAGTTTCTGGACAGGATGTACTTCATTCGAATTTCCTTTCATCTGAGGTTGCAGTGAACTGA 1911 0.4437 MAVSPSVATSTTPASLYVGDLHPELSDAQLREAFSYFNSLVSVRICRDSSTGNSLCYGYVNFLSPQDAIRAIELKNHSILNGKAMRVMWSRRDPDARKSSIGNVFVKNLAQSIDDFVLEDMFEKYGNILSSKVVVTEDGKSKGYGFVQFETEESANTAIENLNGSVIHDKQIYVGKFVKKSDRVMSGPDARYTNLYVKNLDLDITETLLQEKFSSFGKIISLAIAKNNNGMSRGFGFVNFDKPDDAKRAMEAMNGLQLGSKILYVSRAQKKAEREQILHQQFEEKRKEQVLKYKGSNIYVKNINDTVSDEGLRGHFCACGTITSAKVMRDDKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQKKEVRQAQLQLQYGQQIPGLAGPSTAIVPGGYPPFYYQATGVVSHVPPRAGLMYQPMPLRPELRANGSAPPARSFQQSPAPVVSNNTRQHRQNRVRMNGHAVSQGKTHGTFMPQTQQASQPAIPLRESSTQQKTRQAKYVPSGRPHEMEKRSGFSSGCSNSGRGLQVSEMLHLMVAKSTPEQRKEILGEHLYLLVQKIKPNQAAKITGMLLEMDSAKLLVLMESPESLSAKVEEAFQLLKNSKAKVSGQDVLHSNFLSSEVAVN* 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0611 636 MobiDBLite consensus disorder prediction 438 464 - -
Psa5g0611 636 Gene3D - 538 630 - -
Psa5g0611 636 PANTHER POLYADENYLATE-BINDING PROTEIN 9 508 - -
Psa5g0611 636 PANTHER POLYADENYLATE-BINDING PROTEIN 533 621 - -
Psa5g0611 636 CDD RRM1_I_PABPs 15 94 - -
Psa5g0611 636 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 102 179 IPR000504 GO:0003723
Psa5g0611 636 SMART poly_2 551 614 IPR002004 GO:0003723
Psa5g0611 636 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 14 92 IPR000504 GO:0003723
Psa5g0611 636 Coils Coil 265 285 - -
Psa5g0611 636 MobiDBLite consensus disorder prediction 490 510 - -
Psa5g0611 636 SMART rrm1_1 103 175 IPR000504 GO:0003723
Psa5g0611 636 SMART rrm1_1 297 369 IPR000504 GO:0003723
Psa5g0611 636 SMART rrm1_1 194 266 IPR000504 GO:0003723
Psa5g0611 636 SMART rrm1_1 15 88 IPR000504 GO:0003723
Psa5g0611 636 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 193 270 IPR000504 GO:0003723
Psa5g0611 636 Gene3D - 276 387 IPR012677 -
Psa5g0611 636 Gene3D - 97 183 IPR012677 -
Psa5g0611 636 Gene3D - 184 275 IPR012677 -
Psa5g0611 636 SUPERFAMILY RNA-binding domain, RBD 14 181 IPR035979 GO:0003676
Psa5g0611 636 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 296 373 IPR000504 GO:0003723
Psa5g0611 636 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 16 85 IPR000504 GO:0003723
Psa5g0611 636 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 195 262 IPR000504 GO:0003723
Psa5g0611 636 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 104 172 IPR000504 GO:0003723
Psa5g0611 636 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 298 366 IPR000504 GO:0003723
Psa5g0611 636 SUPERFAMILY PABC (PABP) domain 543 623 IPR036053 GO:0003723
Psa5g0611 636 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 14 612 IPR006515 GO:0003723
Psa5g0611 636 SUPERFAMILY RNA-binding domain, RBD 192 377 IPR035979 GO:0003676
Psa5g0611 636 SMART rrm2_1 15 88 IPR003954 GO:0003676
Psa5g0611 636 SMART rrm2_1 103 175 IPR003954 GO:0003676
Psa5g0611 636 SMART rrm2_1 194 266 IPR003954 GO:0003676
Psa5g0611 636 SMART rrm2_1 297 369 IPR003954 GO:0003676
Psa5g0611 636 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 539 616 IPR002004 GO:0003723
Psa5g0611 636 MobiDBLite consensus disorder prediction 490 532 - -
Psa5g0611 636 MobiDBLite consensus disorder prediction 442 464 - -
Psa5g0611 636 Pfam Poly-adenylate binding protein, unique domain 547 611 IPR002004 GO:0003723
Psa5g0611 636 CDD RRM2_I_PABPs 101 176 IPR045305 -
Psa5g0611 636 CDD RRM4_I_PABPs 295 373 - -
Psa5g0611 636 Gene3D - 2 96 IPR012677 -
Psa5g0611 636 PANTHER RNA BINDING PROTEIN 533 621 - -
Psa5g0611 636 PANTHER RNA BINDING PROTEIN 9 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0611 Psa-Chr5 48463654 48468494 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0611 14 634 Eukaryotic Initiation Factors Gene Family AT2G36660 52.556 0.0 615
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0611 K13126 - gmx:100804671 983.786