Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0601 ATGACAATACCATCTCTAGTTAGAAGGCGTTCAAGTGGCGAAATAAGGAACTTGGCCACAATTTCCAACAGTCTGTTACCAGCATTTGGCACTAATCCTGATGAAGGTTACTTCAACCTCAAAAAATATACCATTGCTCCTTATGATCGAAGATATCGATTGTGGCAAACGTTCCTAGTGGCATTGGTGGTGTATTCTGCATGGGCATCTCCATTTGAGTTAGCTTTCAGAGAGATGTCAATTGGGTCGCTGTTGATAGCTGATCTTTTTGTGGATGCTTTCTTTGCATTTGACATAATCCTAACTTTCTTTGTGGCTTACTTGGATACATCAACTTATTTCCTTGTTGATGACCATAAGAAGATTGCTATCAGGTATGTCAAACATTTATACTTTCCCATGGATCTAGCTTCAACTCTGCCATTTCAGCAGATGTATCAACTTATAGCCGGCAAATCACACGATAGAGGGGAAGTCTTTGGTTTTCTTAACATGCTTAGACTCTGGCGATTGAGACGTGTTAGCGAGCTCTTCTCAAGGCTAGAGAAAGACATAAGGGTTAGCTACTCATTAACAAGAGTCTGTAAACTTTTATGCGTTACGCTATTTGCAGTGCACTTCACAGGCTGTGTGTATTTTTGGTTGGCCTACCATCACGAATCACCTGAAAATACATGGATTGGGAAGCAGGTAGAGGATTTTAAGCAAAGGAGTGTAGGGTCGGGATATACTTACTCCATGTACTGGTCTATCGTAACCCTTACTACCGTTGGCTATGGAGATTTGCATGCAGAAAATACAACAGAGAAAGTTTTCAATATATTTTACATGTTGTTTAACATCGGCCTCACTGCATATATTATCGGAAACATGACAAATTTGGTGGTTCATAGCTCTGTCCGAACCTTTGCCATGAGGGATGCCTTCAATAAAATATTACAATATGCGAGCAAAAATGGACTCCCGGTAGGATTGAAGGAGCAAATGTTGGCACATACACAACTGAAGTTTAAGACAGCAGAGTTACAGCAAGAAGAAGTGCTACAGGACCTACCTAAAGCAATTAGAGCTGGTATTGCTCAGCATCTTTTTCACAACGTGATTGAAAAAACATATTTATTTAAAGGAGTCTCAGATGATTTTATATCTCAGCTGGTATCAGATATGAAAGCAGAATACTACCCATCAAAGGTTGACATTATCTTGCAAAATGAGATGCCAGCATATTTCTACATTTTGGTATCTGGATCGGTGGATGTTTTGATATACAAGAATGGATCTGAAAAGTTTTTGTTCAAACTAGAACCTGGAAGCATGGTAGGAGAAATAGGTGTGATGTTTAATATCCCACAACCTTATACAGTGAGAAGTAGAAGACTCTCCCAGCTTATACGAATCGATCATCATCATTTCAAGCAGATGGCAAAACCATTTAATGAAGATGGGAAAGCAGTCATCAGCAATTTTACTCAGTTTTTGAAGGGACTAAGAGGCGGGGTTCTGGAAGAAGTACCACTCGTAACAGAATTTCTGAGTGACTTGCCTGAAGAGGTATATCTTTTCCTTAGAGTTTCAATCACTAAAACTTTTAATTGGTCTACTGAAATGCAGAAACATTTTCCTAATGCTCAGATAGAAAAATTTAAATAA 1650 0.3891 MTIPSLVRRRSSGEIRNLATISNSLLPAFGTNPDEGYFNLKKYTIAPYDRRYRLWQTFLVALVVYSAWASPFELAFREMSIGSLLIADLFVDAFFAFDIILTFFVAYLDTSTYFLVDDHKKIAIRYVKHLYFPMDLASTLPFQQMYQLIAGKSHDRGEVFGFLNMLRLWRLRRVSELFSRLEKDIRVSYSLTRVCKLLCVTLFAVHFTGCVYFWLAYHHESPENTWIGKQVEDFKQRSVGSGYTYSMYWSIVTLTTVGYGDLHAENTTEKVFNIFYMLFNIGLTAYIIGNMTNLVVHSSVRTFAMRDAFNKILQYASKNGLPVGLKEQMLAHTQLKFKTAELQQEEVLQDLPKAIRAGIAQHLFHNVIEKTYLFKGVSDDFISQLVSDMKAEYYPSKVDIILQNEMPAYFYILVSGSVDVLIYKNGSEKFLFKLEPGSMVGEIGVMFNIPQPYTVRSRRLSQLIRIDHHHFKQMAKPFNEDGKAVISNFTQFLKGLRGGVLEEVPLVTEFLSDLPEEVYLFLRVSITKTFNWSTEMQKHFPNAQIEKFK* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0601 549 CDD CAP_ED 373 486 IPR000595 -
Psa5g0601 549 SMART cnmp_10 373 490 IPR000595 -
Psa5g0601 549 PANTHER POTASSIUM CHANNEL KAT3 22 516 - -
Psa5g0601 549 Gene3D Jelly Rolls 338 495 IPR014710 -
Psa5g0601 549 PRINTS EAG/ELK/ERG potassium channel family signature 88 98 IPR003938 GO:0005249|GO:0006813|GO:0016020
Psa5g0601 549 PRINTS EAG/ELK/ERG potassium channel family signature 99 108 IPR003938 GO:0005249|GO:0006813|GO:0016020
Psa5g0601 549 PRINTS EAG/ELK/ERG potassium channel family signature 243 260 IPR003938 GO:0005249|GO:0006813|GO:0016020
Psa5g0601 549 PRINTS EAG/ELK/ERG potassium channel family signature 269 280 IPR003938 GO:0005249|GO:0006813|GO:0016020
Psa5g0601 549 PRINTS EAG/ELK/ERG potassium channel family signature 287 296 IPR003938 GO:0005249|GO:0006813|GO:0016020
Psa5g0601 549 Pfam Cyclic nucleotide-binding domain 395 475 IPR000595 -
Psa5g0601 549 PANTHER POTASSIUM CHANNEL AKT1 22 516 IPR045319 GO:0005249|GO:0006813
Psa5g0601 549 SUPERFAMILY Voltage-gated potassium channels 47 295 - -
Psa5g0601 549 Gene3D - 53 297 - -
Psa5g0601 549 Pfam Ion transport protein 53 297 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Psa5g0601 549 ProSiteProfiles cAMP/cGMP binding motif profile. 373 492 IPR000595 -
Psa5g0601 549 SUPERFAMILY cAMP-binding domain-like 302 492 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0601 Psa-Chr5 47966141 47973021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0601 8 518 Ion Channels AT4G32650 62.305 0.0 633
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0601 K21867 - gmx:100794620 769.615