Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0589 ATGGAGCTCAAAAATGAGAAGCTAGTCAGGTTCTCTAACGATGGAAAGCTTAATCTTGAGAAGCCGATGCAAGTTTACAAGTTTCAGAAAATTCTTAAACCGAGAGGAAAAACTAGTAGCGGCGATATTGATATTGATATTGATATTGATACTGATAATGAGAAGAACAGAATGAATATCAAGTTTCCGACTTTTGGAAAGTTTAAGGTTTTTCAAGAAAATCATGAACCGTGGAAGAAGAGAATTCTTGATCCAGGAAGTGATTTATTTCTCGAGTGGAAACGAGCTTTTTTGTTTTCTTCTATACTATCACTTTTTGTTGATCCGTTGTTTTTCTACCTCCCGTCCGTATCAATCGAAACTGATAATAAGAATTCGTCGTGCATGGTTACTGATTTGAATTTAGGAATCGTCGTCACGTGTTTCCGGACATTTGCTGATGTTTTCTATCTGCTGAACATGGTCATTAAGTTTAGGACAGCCTTTGTGTCACCAAGTTCAAGGGTTTTCGGAAGAGGCGAGCTTGTCATGGACCCGAGTTTGATTGCGAGACGATATTTGAGATCGGAGTTTTTCCTAGATCTTTTAGCTACATTGCCTCTTCCTCAGATCGTGATTTGGTTTATCATGCCAGCGATTCGAAGCTCTCATGCTGATCATACGAACAATGCATTAGTACTGATTGTTCTTCTTCAATATGTTCCTAGATTGTATATGATTTTTCCATTAAGTTCTCAGATTGTTAAAGCTACTGGAGTTGTCACAAAGACGGCTTGGGCCGGAGCTGCTTACAATCTTTTACTTTACATGTTAGCTAGTCATGTGTTGGGGGCATCATGGTATTTGCTGTCAATTGAGAGGCACGCGGCTTGCTGGAAATCTGAATGCAGAAACGAAAACTTACCTGTGAAATGTGTTCTCGACTACCTTGATTGCAGTAGTATAAACGATAACGGTCGCGTGAAATGGATGAATACTACTTCTGTGTTCAGTAACTGTAATCCCGAAAGTAGCACAGATTTCAATTATGGAATTTTCGGAAATGCAGTCCAAAATAATGTTCTGTCCTCTGTGTTTATAGAGAAGTACCTCTATTGTTTGTGGTGGGGATTGCAGAATTTGAGTTCCTATGGTCAGAGTTTGAGTACAAGCACATTTGTTTGGGAAACTGCATTTGCAATACTCATAGCTATCTTAGGTTTGGTTTTGTTTGCTCACTTAATTGGTAACATGCAGACATATTTGCAATCTATTACTGTGAGGCTTGAAGAGTGGAGGCTCAAGCGACGTGACACGGAAGAGTGGATGAAACATCGCCAACTCCCGGAGTTTCTTAGAGAGCGTGTTCGGAGATTTGTTCAGTACAAATGGCTTGCAACTCGAGGTGTTGACGAAGAAACTATCTTAAGAGGCCTCCCTACAGATCTTCGTAGAGATATCCAACGCCATCTTTGCTTAGACCTTGTTCGACGTGTTCCCTTTTTCTCGCAAATGGATGATCAACTACTTGACGCAATATGCGAGCGATTGGTGTCATCTTTGAGTACTCAAGGCACATACATTGTCAGAGAAGGAGACCCTGTTACCGAGATGCTTTTTATCATCAGAGGGAAACTCGAAAGCTCAACCACAAATGGTGGCAGAACTGGTTTCTTTAACTCTATTACCTTAAGGCCTGGTGATTTCTGTGGAGAAGAAGCAGAAGATCTTAAATTCGTGGCAAATCAGTTTCGACGTCTTCACAGCAAGAAGTTGCAGCATACGTTCCGTTTCTACTCTTACCATTGGAGGACATGGGCTGCCTGTTTCATTCAGGTCGCTTGGCGCCGGTTCAAGAAGAGAGTCTTGGCAAATAGTCTCAGCCTGAGAGAATACAAGTCCTTCATCGATGAACAAGCAAGAAATCGTATGGAACACGAGAAAGAAGAGCGCGGTAACACAGCACAAGTAAAACAGAATCTTGGTGTCACTATATTGGCTTCAAGATTTGCTGCAAACACAAGGAAAGGGGTTCAGAAGATCAAGGATGTAGAGATGCTCAAGTTGCAAAAGCCTGAAGAGCCAGATTTCTCAGTAGAGCATGAAGACGATTAA 2094 0.4126 MELKNEKLVRFSNDGKLNLEKPMQVYKFQKILKPRGKTSSGDIDIDIDIDTDNEKNRMNIKFPTFGKFKVFQENHEPWKKRILDPGSDLFLEWKRAFLFSSILSLFVDPLFFYLPSVSIETDNKNSSCMVTDLNLGIVVTCFRTFADVFYLLNMVIKFRTAFVSPSSRVFGRGELVMDPSLIARRYLRSEFFLDLLATLPLPQIVIWFIMPAIRSSHADHTNNALVLIVLLQYVPRLYMIFPLSSQIVKATGVVTKTAWAGAAYNLLLYMLASHVLGASWYLLSIERHAACWKSECRNENLPVKCVLDYLDCSSINDNGRVKWMNTTSVFSNCNPESSTDFNYGIFGNAVQNNVLSSVFIEKYLYCLWWGLQNLSSYGQSLSTSTFVWETAFAILIAILGLVLFAHLIGNMQTYLQSITVRLEEWRLKRRDTEEWMKHRQLPEFLRERVRRFVQYKWLATRGVDEETILRGLPTDLRRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERLVSSLSTQGTYIVREGDPVTEMLFIIRGKLESSTTNGGRTGFFNSITLRPGDFCGEEAEDLKFVANQFRRLHSKKLQHTFRFYSYHWRTWAACFIQVAWRRFKKRVLANSLSLREYKSFIDEQARNRMEHEKEERGNTAQVKQNLGVTILASRFAANTRKGVQKIKDVEMLKLQKPEEPDFSVEHEDD* 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0589 697 CDD CAP_ED 494 592 IPR000595 -
Psa5g0589 697 Pfam Ion transport protein 93 421 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Psa5g0589 697 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 14-RELATED 46 566 - -
Psa5g0589 697 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 14-RELATED 567 693 - -
Psa5g0589 697 SUPERFAMILY Voltage-gated potassium channels 88 416 - -
Psa5g0589 697 SMART cnmp_10 494 615 IPR000595 -
Psa5g0589 697 Gene3D Helix hairpin bin 422 485 - -
Psa5g0589 697 Gene3D - 116 420 - -
Psa5g0589 697 ProSiteProfiles cAMP/cGMP binding motif profile. 494 567 IPR000595 -
Psa5g0589 697 Gene3D Jelly Rolls 492 592 IPR014710 -
Psa5g0589 697 PRINTS EAG/ELK/ERG potassium channel family signature 154 163 IPR003938 GO:0005249|GO:0006813|GO:0016020
Psa5g0589 697 PRINTS EAG/ELK/ERG potassium channel family signature 271 281 IPR003938 GO:0005249|GO:0006813|GO:0016020
Psa5g0589 697 PRINTS EAG/ELK/ERG potassium channel family signature 389 400 IPR003938 GO:0005249|GO:0006813|GO:0016020
Psa5g0589 697 PRINTS EAG/ELK/ERG potassium channel family signature 407 416 IPR003938 GO:0005249|GO:0006813|GO:0016020
Psa5g0589 697 PRINTS EAG/ELK/ERG potassium channel family signature 457 464 IPR003938 GO:0005249|GO:0006813|GO:0016020
Psa5g0589 697 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 46 566 - -
Psa5g0589 697 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 567 693 - -
Psa5g0589 697 SUPERFAMILY cAMP-binding domain-like 424 567 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0589 Psa-Chr5 47323704 47326394 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0589 54 693 Ion Channels AT2G24610 68.029 0.0 951
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0589 K05391 - gmx:100803334 1149.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0589 5 47323704 47326394 Psa5g0589 5 47323704 47326394 ECH