Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Psa5g0585 | ATGGATGGTAAAAGAGCCAACGATGGGGTGATAGTCCCCAGAAAGGGGATAGGAAGCAGTATGTTAAAAGATACTGTAAACACTCGAAATGGTCAAGTATGTAGCCGCCTTGGTTGCAGCAGCAAAGTCGGCTCTTCTAAAGGTTCTCAAATTGGTTCGTCTGAAAAGGGTAAATCTTTGCGGCCCTCATTTCGATTCTCATCAAATGGTAAGGAAACAATTGGTAGCTCCTCTAGAACTTCCTCAGGGAGTAGTAACGTAGGAAAACCCCATAGAAAGCCTCAGAAAACATTATCATCTCATTTAGAGATAGATTCATCTGAAACTAGTAGCGTACAAGATGACCCAGAAGTTTCAAAGCCCACACCTCCACCTGAAAAAAGTCAGAGGGGTCTTCAAGTTGAGGGTGAAACACGGGTTCAGGAAGTAGGGAGTTCTAGTGTAGCATCTAATACAAGATCTAGGAGGAATTTTCATCCGAAACCTGGATTACGTAGTCAAGAAATTCAAAGCACGGGTCCAGGGACACGTGCTGGTACCAATAGGTATGGGTTAAGAAACCTCAAATGCAACTCAGTCTCTGATGTCGTCCCTGCCGGCTGTGCGCCATCAGATTCAAACCTTAGCAGAAGAAATGATTCTATAAAAAAGAGAAATTGTGAAGGGGAAAGTAGTTCTACAGCTAGAGGGAAAAAAATTAGTGGGCCCTCAGGCGAAGGACGAAATTCTGTTTCCCGAAATGGCATATCTATCTCTGATTCAAGAATATCTAGAAATGCCCCTAACAGGGAAAGGCCAGACAACAACACGGTGTCTGTTAGGACACGAAGATCAATTGGCGGTCATGCTAGGGGGAGGCTTTCTGGTCAAGGAAATACTAATCCCGTGGCACCTAATCAGCAGTCTCTTATCATGGTACCTTCATTTTCTCATTCTGGCAATCGTAATGCTCTTGGTGTACAAGATCGTAGTTCTTCGGAGACTCCTTCAAGTCCAAGCTCTTACAGTGGAGCAGGTACTGGCAGCGAGGAGTTATACGGTGTTATAACTCCTACAGAATATAGTCTCACTCATTCTCTAATGAGTCGGGATAGCTTTCGACGACGCTACAACATGGATGGTATTGCAGAGGTATTGTTGGCACTTGAGAGGATTGAACAAGATGTCGAGCTGACACACGAGCAAATTCTTTTGCTGGAGTCCAACTTGTTCCTTACTGGATTAAACTTCTACGATCAGCATAGAGACATGCGACTGGATATTGACAATATGTCATACGAGGAACTACTTGCTCTGGAAGACAGGATGGGGACTGTGAGCACAGCTGTAACAGAGGAAGCTCTTTCGGAATGCCTAAAGAGAAGTTCCTATCAATACTCTGACAGTGCATCTAAAGATGATATCAAATGCAGCATCTGCCAGGAGGAATATACGTTGGAGGAAGAAGTCGGGAGTCTGCAATGTGAGCACAAGTATCACATGGCTTGCATACAGCAATGGCTGCGGCTGAAGAACTGGTGCCCTATTTGCAAAGCATCGGTGACACCGTCAAGTTCACCGTCGTCCCACTAG | 1572 | 0.4491 | MDGKRANDGVIVPRKGIGSSMLKDTVNTRNGQVCSRLGCSSKVGSSKGSQIGSSEKGKSLRPSFRFSSNGKETIGSSSRTSSGSSNVGKPHRKPQKTLSSHLEIDSSETSSVQDDPEVSKPTPPPEKSQRGLQVEGETRVQEVGSSSVASNTRSRRNFHPKPGLRSQEIQSTGPGTRAGTNRYGLRNLKCNSVSDVVPAGCAPSDSNLSRRNDSIKKRNCEGESSSTARGKKISGPSGEGRNSVSRNGISISDSRISRNAPNRERPDNNTVSVRTRRSIGGHARGRLSGQGNTNPVAPNQQSLIMVPSFSHSGNRNALGVQDRSSSETPSSPSSYSGAGTGSEELYGVITPTEYSLTHSLMSRDSFRRRYNMDGIAEVLLALERIEQDVELTHEQILLLESNLFLTGLNFYDQHRDMRLDIDNMSYEELLALEDRMGTVSTAVTEEALSECLKRSSYQYSDSASKDDIKCSICQEEYTLEEEVGSLQCEHKYHMACIQQWLRLKNWCPICKASVTPSSSPSSH* | 524 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Psa5g0585 | 523 | CDD | RING-H2_PA-TM-RING | 470 | 511 | - | - | |
Psa5g0585 | 523 | Pfam | Ring finger domain | 469 | 511 | IPR001841 | - | |
Psa5g0585 | 523 | MobiDBLite | consensus disorder prediction | 139 | 157 | - | - | |
Psa5g0585 | 523 | Coils | Coil | 382 | 402 | - | - | |
Psa5g0585 | 523 | MobiDBLite | consensus disorder prediction | 164 | 178 | - | - | |
Psa5g0585 | 523 | MobiDBLite | consensus disorder prediction | 317 | 342 | - | - | |
Psa5g0585 | 523 | MobiDBLite | consensus disorder prediction | 204 | 295 | - | - | |
Psa5g0585 | 523 | MobiDBLite | consensus disorder prediction | 317 | 340 | - | - | |
Psa5g0585 | 523 | MobiDBLite | consensus disorder prediction | 1 | 183 | - | - | |
Psa5g0585 | 523 | ProSiteProfiles | Zinc finger RING-type profile. | 470 | 511 | IPR001841 | - | |
Psa5g0585 | 523 | MobiDBLite | consensus disorder prediction | 100 | 117 | - | - | |
Psa5g0585 | 523 | MobiDBLite | consensus disorder prediction | 21 | 93 | - | - | |
Psa5g0585 | 523 | MobiDBLite | consensus disorder prediction | 226 | 276 | - | - | |
Psa5g0585 | 523 | SUPERFAMILY | RING/U-box | 460 | 517 | - | - | |
Psa5g0585 | 523 | MobiDBLite | consensus disorder prediction | 210 | 225 | - | - | |
Psa5g0585 | 523 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 433 | 517 | IPR013083 | - | |
Psa5g0585 | 523 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED | 3 | 515 | - | - | |
Psa5g0585 | 523 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF165 | 3 | 515 | IPR045191 | GO:0061630 | |
Psa5g0585 | 523 | SMART | ring_2 | 470 | 510 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Psa5g0585 | Psa-Chr5 | 47021291 | 47025435 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Psa5g0585 | 361 | 511 | C3H Transcription Factor Family | AT2G15530 | 40.000 | 5.04e-32 | 128 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Psa5g0585 | - | - | gmx:100819874 | 679.093 |