Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0585 ATGGATGGTAAAAGAGCCAACGATGGGGTGATAGTCCCCAGAAAGGGGATAGGAAGCAGTATGTTAAAAGATACTGTAAACACTCGAAATGGTCAAGTATGTAGCCGCCTTGGTTGCAGCAGCAAAGTCGGCTCTTCTAAAGGTTCTCAAATTGGTTCGTCTGAAAAGGGTAAATCTTTGCGGCCCTCATTTCGATTCTCATCAAATGGTAAGGAAACAATTGGTAGCTCCTCTAGAACTTCCTCAGGGAGTAGTAACGTAGGAAAACCCCATAGAAAGCCTCAGAAAACATTATCATCTCATTTAGAGATAGATTCATCTGAAACTAGTAGCGTACAAGATGACCCAGAAGTTTCAAAGCCCACACCTCCACCTGAAAAAAGTCAGAGGGGTCTTCAAGTTGAGGGTGAAACACGGGTTCAGGAAGTAGGGAGTTCTAGTGTAGCATCTAATACAAGATCTAGGAGGAATTTTCATCCGAAACCTGGATTACGTAGTCAAGAAATTCAAAGCACGGGTCCAGGGACACGTGCTGGTACCAATAGGTATGGGTTAAGAAACCTCAAATGCAACTCAGTCTCTGATGTCGTCCCTGCCGGCTGTGCGCCATCAGATTCAAACCTTAGCAGAAGAAATGATTCTATAAAAAAGAGAAATTGTGAAGGGGAAAGTAGTTCTACAGCTAGAGGGAAAAAAATTAGTGGGCCCTCAGGCGAAGGACGAAATTCTGTTTCCCGAAATGGCATATCTATCTCTGATTCAAGAATATCTAGAAATGCCCCTAACAGGGAAAGGCCAGACAACAACACGGTGTCTGTTAGGACACGAAGATCAATTGGCGGTCATGCTAGGGGGAGGCTTTCTGGTCAAGGAAATACTAATCCCGTGGCACCTAATCAGCAGTCTCTTATCATGGTACCTTCATTTTCTCATTCTGGCAATCGTAATGCTCTTGGTGTACAAGATCGTAGTTCTTCGGAGACTCCTTCAAGTCCAAGCTCTTACAGTGGAGCAGGTACTGGCAGCGAGGAGTTATACGGTGTTATAACTCCTACAGAATATAGTCTCACTCATTCTCTAATGAGTCGGGATAGCTTTCGACGACGCTACAACATGGATGGTATTGCAGAGGTATTGTTGGCACTTGAGAGGATTGAACAAGATGTCGAGCTGACACACGAGCAAATTCTTTTGCTGGAGTCCAACTTGTTCCTTACTGGATTAAACTTCTACGATCAGCATAGAGACATGCGACTGGATATTGACAATATGTCATACGAGGAACTACTTGCTCTGGAAGACAGGATGGGGACTGTGAGCACAGCTGTAACAGAGGAAGCTCTTTCGGAATGCCTAAAGAGAAGTTCCTATCAATACTCTGACAGTGCATCTAAAGATGATATCAAATGCAGCATCTGCCAGGAGGAATATACGTTGGAGGAAGAAGTCGGGAGTCTGCAATGTGAGCACAAGTATCACATGGCTTGCATACAGCAATGGCTGCGGCTGAAGAACTGGTGCCCTATTTGCAAAGCATCGGTGACACCGTCAAGTTCACCGTCGTCCCACTAG 1572 0.4491 MDGKRANDGVIVPRKGIGSSMLKDTVNTRNGQVCSRLGCSSKVGSSKGSQIGSSEKGKSLRPSFRFSSNGKETIGSSSRTSSGSSNVGKPHRKPQKTLSSHLEIDSSETSSVQDDPEVSKPTPPPEKSQRGLQVEGETRVQEVGSSSVASNTRSRRNFHPKPGLRSQEIQSTGPGTRAGTNRYGLRNLKCNSVSDVVPAGCAPSDSNLSRRNDSIKKRNCEGESSSTARGKKISGPSGEGRNSVSRNGISISDSRISRNAPNRERPDNNTVSVRTRRSIGGHARGRLSGQGNTNPVAPNQQSLIMVPSFSHSGNRNALGVQDRSSSETPSSPSSYSGAGTGSEELYGVITPTEYSLTHSLMSRDSFRRRYNMDGIAEVLLALERIEQDVELTHEQILLLESNLFLTGLNFYDQHRDMRLDIDNMSYEELLALEDRMGTVSTAVTEEALSECLKRSSYQYSDSASKDDIKCSICQEEYTLEEEVGSLQCEHKYHMACIQQWLRLKNWCPICKASVTPSSSPSSH* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0585 523 CDD RING-H2_PA-TM-RING 470 511 - -
Psa5g0585 523 Pfam Ring finger domain 469 511 IPR001841 -
Psa5g0585 523 MobiDBLite consensus disorder prediction 139 157 - -
Psa5g0585 523 Coils Coil 382 402 - -
Psa5g0585 523 MobiDBLite consensus disorder prediction 164 178 - -
Psa5g0585 523 MobiDBLite consensus disorder prediction 317 342 - -
Psa5g0585 523 MobiDBLite consensus disorder prediction 204 295 - -
Psa5g0585 523 MobiDBLite consensus disorder prediction 317 340 - -
Psa5g0585 523 MobiDBLite consensus disorder prediction 1 183 - -
Psa5g0585 523 ProSiteProfiles Zinc finger RING-type profile. 470 511 IPR001841 -
Psa5g0585 523 MobiDBLite consensus disorder prediction 100 117 - -
Psa5g0585 523 MobiDBLite consensus disorder prediction 21 93 - -
Psa5g0585 523 MobiDBLite consensus disorder prediction 226 276 - -
Psa5g0585 523 SUPERFAMILY RING/U-box 460 517 - -
Psa5g0585 523 MobiDBLite consensus disorder prediction 210 225 - -
Psa5g0585 523 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 433 517 IPR013083 -
Psa5g0585 523 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 3 515 - -
Psa5g0585 523 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 3 515 IPR045191 GO:0061630
Psa5g0585 523 SMART ring_2 470 510 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0585 Psa-Chr5 47021291 47025435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0585 361 511 C3H Transcription Factor Family AT2G15530 40.000 5.04e-32 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0585 - - gmx:100819874 679.093
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g0757 6 26755355 26759445 Psa5g0585 5 47021291 47025435 PCT