Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0580 ATGGACCAACCAAAGAAACCTAACAAGATCAGAGACATAGTTAGACTTCAACAAGTCCTTAAGAAATGGAGAAGAATAGCCAACACTTCAAAAACAAACAACAACAGTACTACTAGTAAAAGCATAAAGTTTCTTAAAAGAACACTTTCAATGTCCGAACGCGAAGGAGGAGGATCGACCGCGGTTCCAAAAGGCTACCTAGCAGTTTGTGTTGGTGTAGAACTTAACAGGTTTGTTATACCAACCGAGTATTTGACTCATCAAGCCTTTCATGCATTACTCAGAGAAGCAGAAGAAGAATTCGGATTCGAACAAACTGGTGTTCTGCGAATTCCTTGTGAAGTTTCTGTGTTTGAGAGTATCTTGAAGATGGTGGAAGGAAAAGATGAATTTTCTACTCAGAAATGTAGTTTTGGTATTGAAAAAATGATGGGATACTGTTCCTCAAACCAGCTTGGTTATTATCATCATCCTCATAGTCCTATGTGCAGATAG 495 0.3859 MDQPKKPNKIRDIVRLQQVLKKWRRIANTSKTNNNSTTSKSIKFLKRTLSMSEREGGGSTAVPKGYLAVCVGVELNRFVIPTEYLTHQAFHALLREAEEEFGFEQTGVLRIPCEVSVFESILKMVEGKDEFSTQKCSFGIEKMMGYCSSNQLGYYHHPHSPMCR* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0580 164 PANTHER OSJNBA0060N03.10 PROTEIN 6 164 - -
Psa5g0580 164 Pfam Auxin responsive protein 22 125 IPR003676 GO:0009733
Psa5g0580 164 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 6 164 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0580 Psa-Chr5 46819788 46821125 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0580 3 164 Calmodulin-binding Proteins AT4G31320 51.813 9.66e-57 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0580 K14488 - aprc:113865930 264.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0580 5 46819788 46821125 Psa5g0580 5 46819788 46821125 ECH