Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0564 ATGGAGTTTGAATTGATGGAATTTCCTAACAAAGAAGAAAAGAAAGCAATACTAGAAACTGCTTCAGATAGCATAAACTCACTCAACAATTTCATCGATTTTCTCTCTCACACACCTTCTAATCTAAACTCCGATCTCACAAACACCACCGTTGCTAACTTCAAAAACCTCTCCAACTTACTCAACCGTACCGGCCGTGCCCGCTTCCGTCGCGCTCCCCTCCCTCAACCGCCACAAAATCCCTCTCCCACTCCCACTCCCACTCCCTCTCCCTCCACCTCCACAACGCCACCTCAACTTCAACCTCCTCAGAACCACTCTCTAACTCTTGATTTCACTAAACCTAACATCCTGAGATCTAACCCTAAATCCTTAGATCTAGAATTCCCTAAAGAAGCCTTCAGCGTTTCCTCTAACTCCTCATTCATGTCCTCCGCCATCACCACCGGTGACATCACCGGCGACGGCAGTGTTTCAAACGGTAAACTAGGTTCATCTCTCTTCCTCAACGCCGTCTCCGCCGCTAAACCTCCTCTTTCGTCTACATCATTGAAGAACAGATGTCACGAACACTCCGACAACGGCTCCGGCAAGCGCTCCGGTTCTAATAAGTGCCACTGCATCAAGAAAAGGAAAAATCGGATGAAGAGAACGGTGAGAGTACCGGCGGTGAGTTCGAGGATTGCGGATATACCGTCGGATGAGTATTCGTGGAGGAAGTATGGTCAGAAGCCGATAAAGGGATCACCGTATCCAAGGGGATATTATAGGTGTAGTACAGTGAAAGAGTGTCCTGCGAGGAAAAAGGTTGAGCGAGCGATGGATGATCCAACGATGCTGATTGTAACGTATGAGGAGGAGCATCGTCACGAGATTCATACTGCGATGCAGGAGAATATTTCCGGGAGTATGGATTTGGTGGTATTCGAGTCAACGTTAGGTGGGAATTAG 951 0.4795 MEFELMEFPNKEEKKAILETASDSINSLNNFIDFLSHTPSNLNSDLTNTTVANFKNLSNLLNRTGRARFRRAPLPQPPQNPSPTPTPTPSPSTSTTPPQLQPPQNHSLTLDFTKPNILRSNPKSLDLEFPKEAFSVSSNSSFMSSAITTGDITGDGSVSNGKLGSSLFLNAVSAAKPPLSSTSLKNRCHEHSDNGSGKRSGSNKCHCIKKRKNRMKRTVRVPAVSSRIADIPSDEYSWRKYGQKPIKGSPYPRGYYRCSTVKECPARKKVERAMDDPTMLIVTYEEEHRHEIHTAMQENISGSMDLVVFESTLGGN* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0564 316 Pfam Plant zinc cluster domain 185 230 IPR018872 -
Psa5g0564 316 Gene3D WRKY domain 220 292 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa5g0564 316 MobiDBLite consensus disorder prediction 72 103 - -
Psa5g0564 316 SUPERFAMILY WRKY DNA-binding domain 230 292 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa5g0564 316 MobiDBLite consensus disorder prediction 183 205 - -
Psa5g0564 316 Pfam WRKY DNA -binding domain 234 291 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa5g0564 316 ProSiteProfiles WRKY domain profile. 227 293 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa5g0564 316 MobiDBLite consensus disorder prediction 74 98 - -
Psa5g0564 316 SMART WRKY_cls 232 292 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa5g0564 316 PANTHER WRKY PROTEIN 12 299 - -
Psa5g0564 316 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 12 299 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0564 Psa-Chr5 46070838 46073006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0564 1 311 WRKY Transcription Factor Family AT2G24570 53.495 2.79e-94 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Psa5g0564 WRKY 3.2e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0564 - - gmx:100127394 360.533