Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0561 ATGCAACAAAGACTCAAGTTGCAGCAACAACAACAAGCACTCATGCAGCAAGCTTTGCTTCAGCAACAGCAGATGTACCATCACCCTGGCATGCTTGCCGCTGCCGCTATGACTCAGATGGAGCCTGTACCAAGCGGAAATCTACCTCCTGGTTTTGATGCTTCTGCATGCCGTAGTGTTTATGTAGGAAATATTCATGTAAATGTCACCGATAAACTTCTCGCAGAAGTTTTTCAGAGTGCTGGCCCTCTTGCTGGGTGCAAGCTCATAAGAAAAGAAAAGTCTTCTTATGGTTTTGTGGACTACCATGATCGAGCATCCGCAGCACTTGCAATAATGACATTGCATGGACGACAACTATATGGTCAAGCACTTAAGGTGAATTGGGCATATGCCAATAGCAGTAGGGAGGATACATCAGGTCACTTCAATGTATTTGTTGGTGATTTGAGTCCAGAGGTTACTGATGCAACTTTATTTGCATGCTTCTCAGTCTATACTACTTGTTCTGATGCTAGGGTTATGTGGGATCACAAAACTGGTCGCTCAAAAGGATATGGTTTTGTTTCTTTCCGTGATCATCAGGATGCCCAAAGTGCTATAAATGATATGACGGGTAAATGGCTGGGAAATAGACAAATAAGATGCAATTGGGCAACTAAAGGTGCTGGTGGCAGCTCAAATGAAGAGAAGATCAATGACAGCCAAAATGCTGTTGTGCTTACAAATGGGTCTTCAGATGGTGGTCAAGATAACAGCAATGAGGATGCTCCTGAAAATAATCCTTCATACACCACAGTTTATGTTGGCAACCTTCCCCATGATGTAACACAAGCTGAACTCCATTGTCAATTCCATGCATTGGGAGCTGGGGTACTTGAGGAGGTCCGAGTTCAGAGGGATAAGGGTTTTGGATTTGTCAGATACAATACTCACGAGGAAGCAGCACTGGCTATTCAGATGGCTAATGGAAGACCAGTTCGTGGGAAGACGATGAAGTGTTCATGGGGTAGCAAACCAACTCCTCCTGGGACAGCTTCAAATCCATTACCTCCTCCGGCTGCACAACCATATCAAATACTTCCTACTGCAGGGATGAACCAAGGCTATTCTCCCGCCGAGTTGTTGGCTTATCAGCGCCAGCTGGCCCTGAGTCAGGCCGCTGTATCTGGCCTTTCCGGACAAGCTCTTCTTCAAATGTCTGGACAGCACGGGCTAGCTCCCGCTTCAATGGGCATTAACTCTGCAGCATCTCAAGCCATGTATGATGGATATACTGGTAATTCGTCAAGACAACAGCTTATGTACTATCGTTGA 1317 0.4563 MQQRLKLQQQQQALMQQALLQQQQMYHHPGMLAAAAMTQMEPVPSGNLPPGFDASACRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSSYGFVDYHDRASAALAIMTLHGRQLYGQALKVNWAYANSSREDTSGHFNVFVGDLSPEVTDATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGAGGSSNEEKINDSQNAVVLTNGSSDGGQDNSNEDAPENNPSYTTVYVGNLPHDVTQAELHCQFHALGAGVLEEVRVQRDKGFGFVRYNTHEEAALAIQMANGRPVRGKTMKCSWGSKPTPPGTASNPLPPPAAQPYQILPTAGMNQGYSPAELLAYQRQLALSQAAVSGLSGQALLQMSGQHGLAPASMGINSAASQAMYDGYTGNSSRQQLMYYR* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0561 438 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 143 221 IPR000504 GO:0003723
Psa5g0561 438 PANTHER OLIGOURIDYLATE-BINDING PROTEIN 1B-LIKE ISOFORM X1 9 435 - -
Psa5g0561 438 SUPERFAMILY RNA-binding domain, RBD 251 343 IPR035979 GO:0003676
Psa5g0561 438 CDD RRM3_TIA1_like 265 339 - -
Psa5g0561 438 SUPERFAMILY RNA-binding domain, RBD 137 237 IPR035979 GO:0003676
Psa5g0561 438 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 9 435 - -
Psa5g0561 438 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 145 215 IPR000504 GO:0003723
Psa5g0561 438 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 60 126 IPR000504 GO:0003723
Psa5g0561 438 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 267 333 IPR000504 GO:0003723
Psa5g0561 438 Gene3D - 142 222 IPR012677 -
Psa5g0561 438 Gene3D - 243 343 IPR012677 -
Psa5g0561 438 Gene3D - 1 141 IPR012677 -
Psa5g0561 438 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 58 132 IPR000504 GO:0003723
Psa5g0561 438 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 265 339 IPR000504 GO:0003723
Psa5g0561 438 SUPERFAMILY RNA-binding domain, RBD 42 136 IPR035979 GO:0003676
Psa5g0561 438 SMART rrm1_1 59 128 IPR000504 GO:0003723
Psa5g0561 438 SMART rrm1_1 144 217 IPR000504 GO:0003723
Psa5g0561 438 SMART rrm1_1 266 335 IPR000504 GO:0003723
Psa5g0561 438 CDD RRM2_PUB1 144 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0561 Psa-Chr5 45632298 45642720 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0561 59 333 Eukaryotic Initiation Factors Gene Family AT3G16380 26.712 2.09e-18 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0561 K13201 - gmx:100790916 819.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0561 5 45632298 45642720 Psa5g0561 5 45632298 45642720 ECH