Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0560 ATGAAAGATTCTCCTGCAAAAGTTTTCAAGAAAGCTTGTAAACAAGATCTTTTTTCTCTGGCTCCTATGGCAGGGTTGAACTTTGAAGCTGAATATGTTGATAGCTTTGATGTTCTCAAAGTTTTTGCAGCCCATGGTGTTGAATTTCTCCTATCTTCTCAAGGAAAGGTACCTTTGTTAGATTGCAATGGAAAAATCATCTGTCTATTTTTCTCTGCCAACTGGTGTAGGCCTTGCAAACTTTTCATTCCTCATCTTGTTGATCTTTATGAGACACTGAGGAAGAGAGGGGTAAATATAGAGATTATCTTCGTCTCTTTTGATCGCGACGAGGACGGATTTAAAGAACACGTCGAGAGTATGCCGTGGCTAGCGGTTCCGTTTGATGTGAATTTGCATAGGAAGCTTATTGATAGATATAGGATTGATCGAATCCCGTCGTTCATTCCGTTGTGTTCTGATGCTTTAACTGTTGATGAAAAAGTGATTGAGTGGATTGAGGATTATGGTGCTGATGCGTTTCCTTTCACAAAGAAGAGACATGAGGAATTGAAGGACTTAGATAGAAGAAAACGCGAAGAAGTTGATTTGCAAGAATTGTTGACACGGGAGGGACGCGATTTTCTTATTGCGGGAGATGATAGAAAGGTGGTTGTATCTGAACTAGCCGGGAAAACGGTAGGCCTATTTTTCGGCGCGTATTGGTCTCCTCCTTGTCGTGCCTTCACGGTTCAACTCACTGACGTATACAATAATCTGAATGATACGACAGGTCGCTGCTTCGAGATTGTTTTCGTTTCAACAGATAAGGACCTGAAAGAATTCAATGTTAGCAGAACTAGCACGCCTTGGCTTGCTATCCCGTACGAAGACAGAACAAGGCATGACCTTTGTAGAATCTTCGACATAAAGAAAATTCCAGCTTTGGTCATCATTGGACCAGATGGTAAAGTCGTTAGTTTGAACGGTAAGTTTATGGTCTCCTCGTACGGCGCGGAAGCTTTCCCGTTTACCGAATCGAGGGTTAAAGATTTAGAATCGGCTCTGAGAAAGGAAGGAGAGGCTTTGCCTCAACAGGTTCAGGACGTGAAGCATGAACATGTACTCAAATTGGAAATGGCGAAAGCGTATGTATGCGATTCTTGTAAGAAACAGGGAAAGTTTTGGTCATTCTTTTGTGATGTTTGTGACTATGATCTTCATCCAAGTTGTCTTGAGAAGAACACCAAGAGTTTTGGTAGAAAGAGAGGAATGTGGTTGCCAAAGAATCAACCAGATAAGAAGGATGGTGTAAATGGATTAATAGCAGTGGCAATAGACAAAGAAAAAGGGAGCCAAAATGCACTCAAATGGGCTATCGACAATCTCCTCACAAGAAACGCAACCGTAATCCTCATCCATGTCAAGGTTGTGGCGTCTTCTTTCTCTTCAACGCCTTCGATTTTCACCGCAAGCAAATCTACAAGGGGCGCGACAAATGCTAATGGTAACGACAATTTAACAAGAAGCAAAGATACAGAAGCTCAAAAAAATATTTTCCTACCGTATCGCGTCTTCTGTACGCGCAAAGATATACAATGCAAAGATGTTCTACTAGAAGATTCAGATGTAACAAAAGCATTGGTTGATTATGCTTCTCAGGCAGGAATTGAGCATCTGGTTCTTGGATCTTCAACAAAAGCCGGTTTGCTCAAAAGATTCAAGGTATCAGATGTTTCGGGAACGGTGGCAAAAGCTGCACCGGATTTCTGTACAGTCTATGTCATTGGAAAAGGAAAGATTCAATCGATGCGATCTGCTTCTCGTCCTGCTCCAAGCATTTTCCCTCTACAAGTTAATGAAACTACTATCGTACAAGACCAATCAGACACAAACGATCAACAAGAAAGGAATTCTTTTGATACTACACAGCCGCAGGATGGAATCGATTCCTTCAGGTCACCATTCACCAGGAAAGGTTACAATACCAAACAATATATGGAAAATTCGAAGGCGAATGGTGATATATCTTTTGTGAGTTCTGGAAGGTCGAGTACCGACCGCATGTTGCCTCCATTGTATAACAGCTCGGAGACGGGCACTAGGATGTCATTTAGCTCGGACCAAGATTTAAACTACAGCTTTGAGTCTATGTTTCAAGGAAGGAAGTCTCTCGATTCCAGCAATCCTGCTGAATTTACATCACTAATGTTCGATAACGAAAGGCTTTCATCTTCTTCATCGCAAGCCGTGGATGAAATGGAGGCTGAAATGAGGAGATTAAAGTTGGAGCTCAAGCAAACAATGGAAATGTACAACACAGCTTGTAAAGAAGCACTCACAGCACAACAAAAGGCAATAGAGCTTCAAAAATGGAAGTTAGAAGAAGAACGGAGATTGGAAGAGGCGAGGCTAGCCGAGGAAGCTGCGTTGGCAATCGCTAAAAAGGAGAAGGAAAAATCTAGAGCAGCCATTGAAGCTGCTGAAGCGCAAAAGAGGATAGCAGAACTCGAAGCGCAGAAGAGACTTCAAGCGGAAATGAAAGCACTTAGAGAAGCAGAAGAGAAAAGAAAAGTAATGGATGCTTTGGTAAATGTAGATGTTAGATATAGAAAGTATACGATAGAGGAGATTGAAGCTGCGACAAATTTTTTCTCACAATCCCTCAAGATTGGAGAAGGAGGATATGGTCCAGTTTTTAAGTGTCTTCTAGACCATACACCTGTTGCGGTCAAGGTTCTTCGTCCTGATGCTGCACAAGGAAGGTCGCAGTTTCAACGAGAGGTTGAGGTATTGAGCTGCATACGGCATCCAAACATGGTTCTCCTCTTAGGGGCCTGTCCGGAATACGGCTGCCTAGTGTATGAGTACATGTCAAATGGAAGCTTGGACGATTGCCTGTTTCGGCGAGGAAACAGTCCTCCGCTTCCTTGGCAGCTAAGGTTCAAGATTGCGGCCGAAATAGGCACGGGCTTGTTGTTCCTTCACCAGACAAAACCAGAACCGATAGTCCACAGGGACTTAAAACCAGGAAACATCTTACTAGACAGAAACTTCGTATCCAAGATCAGCGACGTAGGTTTGGCAAGACTAGTTCCACCGTCTGTCGCCGACACTGTGACGCAATATCGGTTGACAGCAACAGCTGGAACATTCTGTTATATTGACCCGGAGTATCAACAGACAGGAATGTTGGGTGTGAAATCAGATATATACTCACTTGGAATCATTTTCCTTCAAATTTTGACAGCAAAATCACCAATGGGACTAGCACATAATGCTCAAAAAGCCATTGAAAATGGAACTTTTACCGAGATGTTGGATCCTGCGATAACTGACTGGCCAATGGAGGCTGTTATGAGTTTAGCAAATATAGCAGTCAAGTGTGCGGAGTTAAGGCGAAAAGATAGACCTGATCTTGGTAACGTTGTGCTTCCAAAACTCGACACATTGAGAGAACTTGCAGAAAATAGTTACCAAAATTCAACACCAGATAGTCCTCGCTCGATGAATGCTTCCCACGACAGACAAATTTCACTGCAGCTGGGTGAAAGCTTTCCTCTATCTGCTCACTCTGAGGAGGTTAGAAGAAACACAACAGTTGGTTTTTGA 3591 0.428 MKDSPAKVFKKACKQDLFSLAPMAGLNFEAEYVDSFDVLKVFAAHGVEFLLSSQGKVPLLDCNGKIICLFFSANWCRPCKLFIPHLVDLYETLRKRGVNIEIIFVSFDRDEDGFKEHVESMPWLAVPFDVNLHRKLIDRYRIDRIPSFIPLCSDALTVDEKVIEWIEDYGADAFPFTKKRHEELKDLDRRKREEVDLQELLTREGRDFLIAGDDRKVVVSELAGKTVGLFFGAYWSPPCRAFTVQLTDVYNNLNDTTGRCFEIVFVSTDKDLKEFNVSRTSTPWLAIPYEDRTRHDLCRIFDIKKIPALVIIGPDGKVVSLNGKFMVSSYGAEAFPFTESRVKDLESALRKEGEALPQQVQDVKHEHVLKLEMAKAYVCDSCKKQGKFWSFFCDVCDYDLHPSCLEKNTKSFGRKRGMWLPKNQPDKKDGVNGLIAVAIDKEKGSQNALKWAIDNLLTRNATVILIHVKVVASSFSSTPSIFTASKSTRGATNANGNDNLTRSKDTEAQKNIFLPYRVFCTRKDIQCKDVLLEDSDVTKALVDYASQAGIEHLVLGSSTKAGLLKRFKVSDVSGTVAKAAPDFCTVYVIGKGKIQSMRSASRPAPSIFPLQVNETTIVQDQSDTNDQQERNSFDTTQPQDGIDSFRSPFTRKGYNTKQYMENSKANGDISFVSSGRSSTDRMLPPLYNSSETGTRMSFSSDQDLNYSFESMFQGRKSLDSSNPAEFTSLMFDNERLSSSSSQAVDEMEAEMRRLKLELKQTMEMYNTACKEALTAQQKAIELQKWKLEEERRLEEARLAEEAALAIAKKEKEKSRAAIEAAEAQKRIAELEAQKRLQAEMKALREAEEKRKVMDALVNVDVRYRKYTIEEIEAATNFFSQSLKIGEGGYGPVFKCLLDHTPVAVKVLRPDAAQGRSQFQREVEVLSCIRHPNMVLLLGACPEYGCLVYEYMSNGSLDDCLFRRGNSPPLPWQLRFKIAAEIGTGLLFLHQTKPEPIVHRDLKPGNILLDRNFVSKISDVGLARLVPPSVADTVTQYRLTATAGTFCYIDPEYQQTGMLGVKSDIYSLGIIFLQILTAKSPMGLAHNAQKAIENGTFTEMLDPAITDWPMEAVMSLANIAVKCAELRRKDRPDLGNVVLPKLDTLRELAENSYQNSTPDSPRSMNASHDRQISLQLGESFPLSAHSEEVRRNTTVGF* 1197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0560 1196 ProSiteProfiles Protein kinase domain profile. 878 1141 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g0560 1196 Coils Coil 770 790 - -
Psa5g0560 1196 Pfam Thioredoxin-like 224 318 IPR012336 -
Psa5g0560 1196 Pfam Thioredoxin-like 64 149 IPR012336 -
Psa5g0560 1196 Pfam Universal stress protein family 435 581 IPR006016 -
Psa5g0560 1196 Gene3D Transferase(Phosphotransferase) domain 1 951 1169 - -
Psa5g0560 1196 Gene3D Phosphorylase Kinase; domain 1 857 950 - -
Psa5g0560 1196 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 435 589 - -
Psa5g0560 1196 Gene3D Glutaredoxin 42 180 - -
Psa5g0560 1196 SUPERFAMILY Thioredoxin-like 49 151 IPR036249 -
Psa5g0560 1196 PANTHER OS02G0152300 PROTEIN 422 1195 - -
Psa5g0560 1196 SUPERFAMILY Thioredoxin-like 213 319 IPR036249 -
Psa5g0560 1196 SMART serkin_6 878 1141 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g0560 1196 Pfam Protein kinase domain 880 1131 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g0560 1196 Coils Coil 804 849 - -
Psa5g0560 1196 SUPERFAMILY Protein kinase-like (PK-like) 861 1137 IPR011009 -
Psa5g0560 1196 MobiDBLite consensus disorder prediction 621 647 - -
Psa5g0560 1196 ProSiteProfiles Thioredoxin domain profile. 173 347 IPR013766 -
Psa5g0560 1196 ProSiteProfiles Thioredoxin domain profile. 19 171 IPR013766 -
Psa5g0560 1196 Coils Coil 737 764 - -
Psa5g0560 1196 PANTHER UNIVERSAL STRESS FAMILY PROTEIN 422 1195 - -
Psa5g0560 1196 ProSitePatterns Serine/Threonine protein kinases active-site signature. 996 1008 IPR008271 GO:0004672|GO:0006468
Psa5g0560 1196 Gene3D HUPs 434 590 IPR014729 -
Psa5g0560 1196 SUPERFAMILY Cysteine-rich domain 356 406 IPR046349 -
Psa5g0560 1196 CDD STK_N 434 592 - -
Psa5g0560 1196 Gene3D Glutaredoxin 201 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0560 Psa-Chr5 45623573 45629086 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0560 418 1154 Receptor kinase-like Gene Family AT1G78940 54.954 0.0 768
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Psa5g0560 Pkinase 4.5e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0560 - - gmx:100803867 1074.31