Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0553 ATGGAGAAGAGTGAAACGACGCTGGATTTAGCTGCTCGGAGATTTGTGAGGCACTTGGATTTCACTGCCGTATGTGGAGGTCCGGCGTACTTGACATTATCGCCACCGACGCAACAGTCGCAAACTATTCTACAGTCGCCGACGCAGTCGCGTTCTCCGGCGCAATTGACATTGGATTTTCAGTCATCGAGTCAACGGCCGTGGTTACCTTCACAGCCACGGTGGCAACAGCAGAGAACGTCACAGTCTCAGCCGGTAATGCCACAGTTAGTTTCTCCGGTCCGTCGTTTACAGCACCCCTCACAGAAGCTTCCGGTGAAGAGAAAGCACGAGTCTCCTAGATCACAGCCTCAACATAATGCAGGATTAAAGGATAATACTCCAAAGAAACAAAAACAGTGTAACTGCAAAAATTCTCGATGCCTTAAATTGTACTGTGAGTGCTTTGCAGCTGGGATCTATTGTGATGGATGCAACTGTCTGAATTGTCATAATAATGTGGACAATGAGGCTGCTCGTCAGGAAGCAGTTGGAATAACTCTGGAAAGAAATCCAAATGCTTTCAGACCAAAAATTGCAAGCAGTCCACAAAAACCAGAAGTTTCTATGGAGGAAGTGTCTGAAATTCAAGTAACAGGAAAGCACAATAAAGGATGTAACTGCAAGAAATCAGGTTGCCTTAAGAAGTATTGTGAGTGTTTCCAAGCCAATATCCTCTGCTCTGAAAATTGTAAATGCATGGACTGCAAGAATTTTGAAGGATGTGACGAACGAAGAGCAGTTTTCCAAGAAGAGTGTAAACTAGTACAAATCAGACAGACAACTAACGCGGCCATTAGTGGAGCAGTTGGACCCTTCAGCCCTAGAACCCACATAACACCCAAGAAGAGAAAAATCCCAGAAATACTTTCTGGCAAATCCTTTATAGATCAAACCGTTAACATGACTGCTCAATGCCAACAGGGTCACCATTCAAATTCAGTGTGTTTGGATTTGAAAGCATGTGAAACTAATAAGGAACTCGATCCTACGGCTTCATCTCTTTTATCCCTGTCAGCTTCCTGTGTTTCTAACACTGCCAATACAATAATTCCAGGATCTTCAAGATCTACATACAGGTCTGTGTTGGCTGATGTCCTCCAGACACAGAATGTGAAGAATCTTTGTTCACTTTTAGTTGTTCTCTCTGGAGAAGCTACAAAGAAAAATGCAGAAATGAGAGGGAAAGAAGTTAGAAAAGTAGAGACCAGGAAATCTGAAGCTTCGACTATTTCATCAGCTCAATCGTTGCAAGACAGTCAAAAAGTTGTCAAGACTGATTGTGAGAATCATGCAAATAAAGATGTAACAGATGCGGTTGATATTGACGTTCGTAATAGGCCATTGTCACCGGAAACACTTGAATTGATGTGTGATGAACAAGATGTGATGTTTTTCGATACTGGTTCTGCAAATGGAGTTGCAATTGAAAACACTAAACATAACATGATTCAGAAATCTTCCAATTCTGATGGATGCACAGATACTTATGCAGAGCAGGAAAGGCTTATCTTGACCAAGTTCAGAGATGTTCTTGGTGGACTCATTACTCTTGGTAGCATAAAAGGCCAGATTCCAGAAGCAGAAAGTGGGATCAGAAATAAATGA 1647 0.4238 MEKSETTLDLAARRFVRHLDFTAVCGGPAYLTLSPPTQQSQTILQSPTQSRSPAQLTLDFQSSSQRPWLPSQPRWQQQRTSQSQPVMPQLVSPVRRLQHPSQKLPVKRKHESPRSQPQHNAGLKDNTPKKQKQCNCKNSRCLKLYCECFAAGIYCDGCNCLNCHNNVDNEAARQEAVGITLERNPNAFRPKIASSPQKPEVSMEEVSEIQVTGKHNKGCNCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGCDERRAVFQEECKLVQIRQTTNAAISGAVGPFSPRTHITPKKRKIPEILSGKSFIDQTVNMTAQCQQGHHSNSVCLDLKACETNKELDPTASSLLSLSASCVSNTANTIIPGSSRSTYRSVLADVLQTQNVKNLCSLLVVLSGEATKKNAEMRGKEVRKVETRKSEASTISSAQSLQDSQKVVKTDCENHANKDVTDAVDIDVRNRPLSPETLELMCDEQDVMFFDTGSANGVAIENTKHNMIQKSSNSDGCTDTYAEQERLILTKFRDVLGGLITLGSIKGQIPEAESGIRNK* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0553 548 PANTHER TESMIN/TSO1-RELATED 1 538 IPR028307 -
Psa5g0553 548 MobiDBLite consensus disorder prediction 61 129 - -
Psa5g0553 548 ProSiteProfiles CRC domain profile. 130 254 IPR005172 -
Psa5g0553 548 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 131 166 IPR005172 -
Psa5g0553 548 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 217 251 IPR005172 -
Psa5g0553 548 MobiDBLite consensus disorder prediction 61 89 - -
Psa5g0553 548 MobiDBLite consensus disorder prediction 36 55 - -
Psa5g0553 548 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 1 538 - -
Psa5g0553 548 MobiDBLite consensus disorder prediction 406 431 - -
Psa5g0553 548 SMART CXC_2 214 255 IPR033467 -
Psa5g0553 548 SMART CXC_2 129 169 IPR033467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0553 Psa-Chr5 44569835 44574988 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0553 10 535 CPP Transcription Factor Family AT4G29000 43.063 2.21e-119 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Psa5g0553 TCR 2.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0553 - K21776 gmx:100811459 642.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0553 5 44569835 44574988 Psa5g0553 5 44569835 44574988 ECH