Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0542 ATGGAAGAAAGCAGTGGAAAGGAGAAAACCCTACCACCTGGATTTCGATTTCATCCTACAGACGAAGAACTCATCACTTGCTATCTCATAAATAAGATATCAGATTCTAGTTTTACGGGAAGAGCAATCACTGATATAGACCTCAATAAATTCGAACCATGGGACCTTCCAGGGAAAGCAAAGATGGGAGAAAAAGAATGGTACTTTTTCAGCATGAGAGATCGTAAATACCCAACTGGTGTAAGAACCAATAGAGCAACTAACACTGGATACTGGAAAACCACAGGGAAAGACAGAGAAATTTTCGACAGTGTTACGTCAGAATTGGTTGGTATGAAGAAGACTTTGGTTTTCTACAAAGGTAGAGCTCCTAGAGGAGAGAAAAGCAACTGGGTCATCCATGAATATCGTGTTCACTCTCAATCAACTTTCACAACAAACAAGGAGGAAGGATGGGTAGTTTGTAGGGTATTCAAGAAGAGTGGAAGTGGAAAAAAGTATCCTAGTAATAATTCAAACCCTACAAAAGCAGGAGTGAATCCTTATAGCATGCACGAGATAGGTACTAATCATATGATGCTGAGAGATTCTTCATCTCCTTATAATTTCCTTTACGGATGGAATCATAACTATAACGGTACTGCTGCACCAACAGTGCAATATTCTCAGTTGAACTATCCTGCAAATATGTTGTCAGCAACAACAGGTGGAGATGGAGGATTCAGCATTTCAGGGCTTAACTTGAATCTTGGAAATGGAGTAACTATGGCTGATCATGTGAATTCAATAAACATGAATATGATGAATGCAGGCAATAATATGAACTGTGTTGGTGCAGATGAGAATATTAATAATGTTATAGGTTATGGTATTGGTATGGAACATTGCACTGATCTCGACACTTACTGGCCTTGTTCCTACTAA 924 0.3896 MEESSGKEKTLPPGFRFHPTDEELITCYLINKISDSSFTGRAITDIDLNKFEPWDLPGKAKMGEKEWYFFSMRDRKYPTGVRTNRATNTGYWKTTGKDREIFDSVTSELVGMKKTLVFYKGRAPRGEKSNWVIHEYRVHSQSTFTTNKEEGWVVCRVFKKSGSGKKYPSNNSNPTKAGVNPYSMHEIGTNHMMLRDSSSPYNFLYGWNHNYNGTAAPTVQYSQLNYPANMLSATTGGDGGFSISGLNLNLGNGVTMADHVNSINMNMMNAGNNMNCVGADENINNVIGYGIGMEHCTDLDTYWPCSY* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0542 307 SUPERFAMILY NAC domain 9 160 IPR036093 GO:0003677|GO:0006355
Psa5g0542 307 Pfam No apical meristem (NAM) protein 12 138 IPR003441 GO:0003677|GO:0006355
Psa5g0542 307 Gene3D NAC domain 20 164 IPR036093 GO:0003677|GO:0006355
Psa5g0542 307 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 6 279 - -
Psa5g0542 307 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 279 - -
Psa5g0542 307 ProSiteProfiles NAC domain profile. 11 160 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0542 Psa-Chr5 43998512 43999952 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0542 2 304 NAC Transcription Factor Family AT2G24430 48.949 2.36e-99 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Psa5g0542 NAM 1.7e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0542 - - lja:Lj1g3v2035130.1 374.015