Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0530 ATGGGAAGTGAGAGGTCAATTTCGGGTCCATCTGATACTGTACAGAAAATTAGACCATTGCATGGAAGGACTACTGGCCCTACAAGGCGATCCACCAAAGGAAATTGGACAGCTGAGGAGGACGATATTTTGCGGAAGGCTGTTGAGCGTTTTAAAGGAAAGAATTGGAAAAAAATAGCGGAGTGTTTCAAGGATAGAACTGATGTACAATGCCTGCATAGGTGGCAAAAAGTCTTAAATCCAGAACTTATCAAAGGTCCTTGGTCTAAAGAGGAGGATGAAACAATCGTTGATTTGGTAAACAAATATGGGCCTAAAAAGTGGTCTACTATAGCACAACATTTACCTGGACGTATTGGAAAGCAATGTCGAGAAAGGTGGCATAATCATCTTAATCCTTCTATAAATAAGGAAGCATGGACGCAGGAAGAAGAGTTGGCTCTAATACATGCTCATCAGATTTATGGGAATAGATGGGCAGAATTATCAAAGTTTTTGCCTGGAAGGACTGACAATGCAATAAAGAACCACTGGAATAGTTCTGTCAAAAAGAAATTAGATTCTTACTTAGCGTCGGGCTTGCTTGCTCAGTTTCAAAATGTACAACTTGTTGGAAATCCAAATCAACCTATTGCTTCATCCTGTGCAAGGTTGCAGTTTAGTGTAGATGATAATGATCCTAGGGGGACTGAAGGTGAGGAAGTTTCACAGTGTAGCCAGGAATCAGCTAATGCTGATAACTTTCCGTCTGGCAGAGAGTTGAGAATTGTTGTTATGCAAAATGGAGAAGAGTACATTGCAAATGAAGAATCTAATCAAGCGTCATGTTCAGAGCCATATTACTTGTCTCTGGATGATGTTACTTGCCAAGAATCATTTGATCAGAAATATTCAAACCAACCCGGAAGTTCCTCCGCTAACGTGGATTACCAATTTAATTTACATGCTTTGTCCAACATTTCCTCCCTTGACTTTGGGCAGGAATCATCACAGTTGCAAAATGATTCGTTAGCTCCCAGTGAAAGTCATAACATGATGATTGTTCCATATGAATATCAGCCTTCATCTATGGACAATGTTGAAGGAGAACAAAACATGTTGGTAACTAATGATGAATGCAGCAGATTCCTGTTTTCAGAGGCAATGAGTGATGAATGCTTTTCCTTGGGAGGAGTAAATAATGTTGACTTGTCTAGATGCACTTCATCTCTTTGTCAGTCATCTTGTGGTAGGATGGAGATGTATGCTGCCGATGCCAATCCATTGGTAGGCTCTGAGGATCAACATTGTGTCTCGAGAGAACACAATGGCTTGATTTATGCCAATGATAACAATAGATTTGAAGATGTTGGGAAAGATGGAAATTTAAAATTGGTCCCTGTAAATAGTTCTGGCTGTGGATCAGATACTATGCAAACTTGCTATCCAATTGATGAAAAAGCAAAGGTACATATAAAACAGGAGGAAGCAGGAGGAAAACTCTGTTATGAACCACCTCGTTTTCCAAGCTTGGATATACCTTTCATGAGCTGTGATCTTATACAGTCCGGTGATATGCAGCAAGAATTCAGTCCCTTAGGTATCCGCCAGTTTATGATGTCATCTATGAACTGTCTTACTCCTTTTAGATTGTGGGACTCACCTTCTCGCATTGATAGTCCAAAGACTTTGTTAAAAGGTGCTGCTAAAACTTTTACTAGTACACCATCCATAATGAAAAAGAAACGAAACCGAGACCTTTTAACTCCACTATCAGATAGAAGAATGGAGAAGAAACATGAGATTGACATGACATCAACTTTGATTACAAACTTTTCTCGTTTGGATGTCATGTTTGATGATAATGACGCTCAAGGTATTGAAGATAATAAAGAAAATTGTAGACCAGCTTTTAAGGTAGAGGCTCAAGGTATTGAAGATGATAAAGAAAATTGTAGACCAGCTGAGGAGAAAAGTAACTCTCAGAAGAAGATTGAGCAGTCTCCTCTAGATGCCAATTCTAAGATGAAGAATGATATTGATCCTGTTGCTGAAATTGTGCAACAGCCTTCTGGAGTTCTGGTTGAACATGATATCAATGATCCGTCGTTGTATTCTCCTCGTCAAATTGGATTGAAATCAGACATAGTTCTTAGTTTAAGTGCTAGAAGTCATAAAGAGCCAGCTTCAAGACTTAACTCTCCTTGTGTTCGATTAAAGGAGCACGAAAGACTCTCAGTTTCTGTTACTTGTGTACAATCCGTCTTAACACCATCAGGCCCAGGAGAGAGTATGGGCGATCAAACCGGAAACGATGGTGGTTTTGAAAGAAATAACATTTTTGGCGGAACACCTTATAGGAAAAGCTTCGAATCACCTTCGGCATGGAAATCCCCCATGTTCATCAGCACTTTTTTGTCTAGCCCCAGGATTGATACTGAAATTACAATTGAGGACTATGGATGTTTCTTTAGCCCGGGCGATAAAAGCTATGATGCAATGGGATGGATGAAACAGATTGGTGAACACACTGCTGCTCAATATGCCGATGCTCTAGAGGTTTTGGAAAATGAATCTCCTAAGGCACTAACGAAAGATGCATCGGGAGACAACCAAGAAAATATCGATCCTCATAATCAGCCTGGGAACCATTCTAACTCGGCTTCAAATGCTTTGGTGGAGCGACGCATGCTTGACTTCAGCGAATGTGGATCTCCAGGGAAGGGTGATAATGGCAAATCCTCAGTTATGAGCATTTCAAGTCCTTCTTCGTATTTGTTGAAGGGCTGTAGATAA 2775 0.4025 MGSERSISGPSDTVQKIRPLHGRTTGPTRRSTKGNWTAEEDDILRKAVERFKGKNWKKIAECFKDRTDVQCLHRWQKVLNPELIKGPWSKEEDETIVDLVNKYGPKKWSTIAQHLPGRIGKQCRERWHNHLNPSINKEAWTQEEELALIHAHQIYGNRWAELSKFLPGRTDNAIKNHWNSSVKKKLDSYLASGLLAQFQNVQLVGNPNQPIASSCARLQFSVDDNDPRGTEGEEVSQCSQESANADNFPSGRELRIVVMQNGEEYIANEESNQASCSEPYYLSLDDVTCQESFDQKYSNQPGSSSANVDYQFNLHALSNISSLDFGQESSQLQNDSLAPSESHNMMIVPYEYQPSSMDNVEGEQNMLVTNDECSRFLFSEAMSDECFSLGGVNNVDLSRCTSSLCQSSCGRMEMYAADANPLVGSEDQHCVSREHNGLIYANDNNRFEDVGKDGNLKLVPVNSSGCGSDTMQTCYPIDEKAKVHIKQEEAGGKLCYEPPRFPSLDIPFMSCDLIQSGDMQQEFSPLGIRQFMMSSMNCLTPFRLWDSPSRIDSPKTLLKGAAKTFTSTPSIMKKKRNRDLLTPLSDRRMEKKHEIDMTSTLITNFSRLDVMFDDNDAQGIEDNKENCRPAFKVEAQGIEDDKENCRPAEEKSNSQKKIEQSPLDANSKMKNDIDPVAEIVQQPSGVLVEHDINDPSLYSPRQIGLKSDIVLSLSARSHKEPASRLNSPCVRLKEHERLSVSVTCVQSVLTPSGPGESMGDQTGNDGGFERNNIFGGTPYRKSFESPSAWKSPMFISTFLSSPRIDTEITIEDYGCFFSPGDKSYDAMGWMKQIGEHTAAQYADALEVLENESPKALTKDASGDNQENIDPHNQPGNHSNSASNALVERRMLDFSECGSPGKGDNGKSSVMSISSPSSYLLKGCR* 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0530 924 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 136 186 IPR017930 -
Psa5g0530 924 ProSiteProfiles Myb-like domain profile. 132 182 IPR001005 -
Psa5g0530 924 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 28 79 IPR017930 -
Psa5g0530 924 SUPERFAMILY Homeodomain-like 82 178 IPR009057 -
Psa5g0530 924 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 80 135 IPR017930 -
Psa5g0530 924 MobiDBLite consensus disorder prediction 1 36 - -
Psa5g0530 924 MobiDBLite consensus disorder prediction 226 246 - -
Psa5g0530 924 MobiDBLite consensus disorder prediction 638 657 - -
Psa5g0530 924 MobiDBLite consensus disorder prediction 232 246 - -
Psa5g0530 924 Gene3D - 32 84 - -
Psa5g0530 924 MobiDBLite consensus disorder prediction 857 885 - -
Psa5g0530 924 Gene3D - 85 136 - -
Psa5g0530 924 CDD SANT 87 131 IPR001005 -
Psa5g0530 924 SUPERFAMILY Homeodomain-like 34 89 IPR009057 -
Psa5g0530 924 PANTHER MYB PROTEIN-RELATED 493 923 - -
Psa5g0530 924 PANTHER MYB PROTEIN-RELATED 8 418 - -
Psa5g0530 924 ProSiteProfiles Myb-like domain profile. 80 131 IPR001005 -
Psa5g0530 924 ProSiteProfiles Myb-like domain profile. 28 79 IPR001005 -
Psa5g0530 924 MobiDBLite consensus disorder prediction 904 918 - -
Psa5g0530 924 MobiDBLite consensus disorder prediction 856 924 - -
Psa5g0530 924 PANTHER TRANSCRIPTION REPRESSOR MYB5 8 418 - -
Psa5g0530 924 PANTHER TRANSCRIPTION REPRESSOR MYB5 493 923 - -
Psa5g0530 924 SMART sant 84 133 IPR001005 -
Psa5g0530 924 SMART sant 32 81 IPR001005 -
Psa5g0530 924 SMART sant 136 184 IPR001005 -
Psa5g0530 924 CDD SANT 139 179 IPR001005 -
Psa5g0530 924 Gene3D - 138 199 - -
Psa5g0530 924 CDD SANT 35 79 IPR001005 -
Psa5g0530 924 MobiDBLite consensus disorder prediction 638 664 - -
Psa5g0530 924 Pfam Myb-like DNA-binding domain 33 79 IPR001005 -
Psa5g0530 924 Pfam Myb-like DNA-binding domain 137 179 IPR001005 -
Psa5g0530 924 Pfam Myb-like DNA-binding domain 85 131 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0530 Psa-Chr5 41516730 41522805 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0530 21 924 MYB Transcription Factor Family AT4G32730 43.633 0.0 671
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa5g0530 Myb_DNA-binding 1.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0530 - K09420 cam:101506533 1495.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0530 5 41516730 41522805 Psa5g0530 5 41516730 41522805 ECH