Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0519 ATGTTTACTAGTAATACAAACCATTTTCTAATACTAATTATGTTTCTTTCATTACTCTTAAACATTCAAAGCCAAGAAAACAGACAAAACCAGAACATGCCAGACTTACCACAAGGTGTAACTCCAAGTAAAGGTGTTGTAATAATTGTTCTTTCCATTATGTTTCTCATCACTTTTATGTTACTTGTTTATGTCAAATTCTGTCGTGTTACACCTCTTCATCTTATAAACCAAAACCCTCTTAATCAAGGAACAACTCGATCACGGTCTATAGTTTTCGGTGTTGAGAAGAAAGTAATTGAAACACTTCCTTTCTTTAAATTTTCTTCCTTAAAGGGATCCAAACAAGGACTAGAATGTACCGTTTGTTTGTCGAAATTCGAAGACGAAGAGACGCTTAGATTGTTGCCGAAATGCAAGCATGCTTTTCATATGAGTTGTATTGATAAGTGGCTTGAAAGTCACTCTACTTGTCCTCTTTGTAGGTACATGGTTGAAGAAAACGACATAAGAAACTTCACTTTTTCATTCAGTTCAAGATTCTTAAGAGTTCCTTCAAACCTAAGTGAGGATCCGAATCTTGAGATTTTTATTCAGAGAGAACCTTCTCAAAGAAAGAGTAAAAGAGAAGAACTAGAACTAGTCCTTGATCATGAAGAAAGTGGTAGCAGTAATGTTACAAAGTGGAATCAACAACAACAACAACTACAACTACAACAACAACCTTTGCATATGATTAATCATAGAATATTGATCTCTGATGTTGTAACAAGGAGTAGATGGAGTGATCTTAACTCTTCTGATTTGTTATCATTGAAAAGTGAGATGCTTCATGATGTGTCAAGTGCAAGATTTTCTCCTGATGAGGATGAAAACTCGTTTACAGCATTGAATCCTGGTGAGAAGAGGTGTATGTCTGAGATTGCAAATGTTCCAAGGTTTGTGGAAATTAACAACAGAAGAAGAAATGGAAATGATGAGAGATTGCGGAGGATTTGGTTGCCAATTGCAAGGAGAACAGTTCAATGGTTTGCAAGACAAGAAACAAACTCGGTTCAGTTATTGCAACATAAACATTTAGCTTCAAATGTTTGA 1095 0.3516 MFTSNTNHFLILIMFLSLLLNIQSQENRQNQNMPDLPQGVTPSKGVVIIVLSIMFLITFMLLVYVKFCRVTPLHLINQNPLNQGTTRSRSIVFGVEKKVIETLPFFKFSSLKGSKQGLECTVCLSKFEDEETLRLLPKCKHAFHMSCIDKWLESHSTCPLCRYMVEENDIRNFTFSFSSRFLRVPSNLSEDPNLEIFIQREPSQRKSKREELELVLDHEESGSSNVTKWNQQQQQLQLQQQPLHMINHRILISDVVTRSRWSDLNSSDLLSLKSEMLHDVSSARFSPDEDENSFTALNPGEKRCMSEIANVPRFVEINNRRRNGNDERLRRIWLPIARRTVQWFARQETNSVQLLQHKHLASNV* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0519 364 SUPERFAMILY RING/U-box 101 167 - -
Psa5g0519 364 SMART ring_2 120 161 IPR001841 -
Psa5g0519 364 Pfam Ring finger domain 119 162 IPR001841 -
Psa5g0519 364 ProSiteProfiles Zinc finger RING-type profile. 120 162 IPR001841 -
Psa5g0519 364 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 289 358 - -
Psa5g0519 364 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 16 289 - -
Psa5g0519 364 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 171 IPR013083 -
Psa5g0519 364 PANTHER RING-H2 FINGER PROTEIN ATL4J 16 289 - -
Psa5g0519 364 PANTHER RING-H2 FINGER PROTEIN ATL4J 289 358 - -
Psa5g0519 364 CDD RING-H2_PA-TM-RING 119 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0519 Psa-Chr5 41228239 41230258 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0519 42 348 C3H Transcription Factor Family AT2G20030 41.714 2.36e-73 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0519 K10664 - gmx:100816668 386.341