Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0507 ATGAGTACTACTATTCAACAACCTCATAACTCCGAAACCAAAACCATCTCCAACAATTCACCACCCCAATCCTCACAATCACCATCCCAATCCCAAAAAATCAAACGCATTAGAGACACAAACACAAACACAAACAAGCATCCACTCTACCGCGGCGTCCGTATGCGAAACTGGGGAAAATGGGTGTCTGAAATCCGCGAGCCGAAGAAAAAGTCCCGAATATGGCTCGGCACATTCCCAACTCCAGAAATGGCTGCTCGAGCCCACGACGTAGCCGCTCTCAGCATCAAAGGAAATGCTGCCATTCTCAATTTCCCCGAGTTAGCCAACTCGCTCCCCCGCCCGGCTTCAGTCTCTCCCCGGGATGTTCAGGCCGCTGCTACGAAAGCCGCTCACATGGAGTTTCCTTCTTCAGCAACCCCGTATGAGTTGAGTGAGATCATTGAACTTCCTAGCTTAGAAAACAGTGGTGAATTCGAGAAGGAGTTTGTCTTTATGGACTCTATCGACGCTTCGTGGATGTTTCAGCCTCCTTGCTTGCACACCATGGAAGATGTTCTTTGGAGTGGAGGTTATAGTAACTATGGCTAG 591 0.4907 MSTTIQQPHNSETKTISNNSPPQSSQSPSQSQKIKRIRDTNTNTNKHPLYRGVRMRNWGKWVSEIREPKKKSRIWLGTFPTPEMAARAHDVAALSIKGNAAILNFPELANSLPRPASVSPRDVQAAATKAAHMEFPSSATPYELSEIIELPSLENSGEFEKEFVFMDSIDASWMFQPPCLHTMEDVLWSGGYSNYG* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0507 196 SUPERFAMILY DNA-binding domain 49 107 IPR016177 GO:0003677
Psa5g0507 196 SMART rav1_2 49 112 IPR001471 GO:0003700|GO:0006355
Psa5g0507 196 MobiDBLite consensus disorder prediction 1 47 - -
Psa5g0507 196 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 8 137 - -
Psa5g0507 196 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 138 183 - -
Psa5g0507 196 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Psa5g0507 196 PRINTS Ethylene responsive element binding protein signature 72 88 IPR001471 GO:0003700|GO:0006355
Psa5g0507 196 ProSiteProfiles AP2/ERF domain profile. 49 106 IPR001471 GO:0003700|GO:0006355
Psa5g0507 196 Gene3D AP2/ERF domain 49 107 IPR036955 GO:0003700|GO:0006355
Psa5g0507 196 CDD AP2 48 108 IPR001471 GO:0003700|GO:0006355
Psa5g0507 196 Pfam AP2 domain 48 98 IPR001471 GO:0003700|GO:0006355
Psa5g0507 196 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 8 137 - -
Psa5g0507 196 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 138 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0507 Psa-Chr5 40608059 40609707 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0507 10 196 AP2-EREBP Transcription Factor Family AT5G11590 52.273 1.70e-65 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa5g0507 AP2 8.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0507 K09286 - gmx:100794316 217.238
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0507 5 40608059 40609707 Psa5g0507 5 40608059 40609707 ECH