Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0506 ATGGAAGCTCAAGAGTTTTTCCAAACCACCTTTTTGCCTCAATTCGGTTCCTCCTCTTCCGACAATAATTTGACGACAACCAATGTAAGCACCGCCGCCGCTGCTAGTTCCGACCACTTCATCGTTGAAGATCTGTTTGATTTCTCTAATGATGATGATGCTGCCATTGGTGACCCTGCTTTTGATTCTCCTCCTACCATTTCTGATAATTCTCCACCTCTTGAAACTAACGTCAGTTCCAATTTTTTTATGGACAATTCTTGCCAGAATTCTGTCGACGGCCCTTTCTCCGGCGAACTCTCCGTCCCGTATGATGATCTTGCGGAGCTTGAATGGTTATCCAAATTTGATGAAGAATCATTCTCAAGTGAGGACCTACAGAAGCTTGAATTGATATCTGGCATGAAAGCATCAAACGACGCCGCATCAAAAACACACGATGAATCCAACTCAATACTACACCCTCCTCAAGTGTCTGTCCCCGCTAAAGCCCGCAGTAAACGACCTCGTGGACCACCATGCAACTGGACTTCTCGTCTTCTAGTTCTCTCTTCACCCACCATCGCCACAACATCTTCTCGCTCTGACATTATATCTCCACCAAAGAAACCCTCGCCGAGAAAGAGAGACCATGGCGATGGTGAGGGTCGCAAGTGTCTTCATTGCGCCACTGATAAAACACCTCAGTGGCGCACTGGACCATTAGGTCCAAAAACATTATGCAATGCATGTGGAGTCAGGTACAAGTCAGGTCGACTCGTACCTGAATACAGACCCGCAGCAAGCCCAACATTCGTCCTGACGAAACACTCCAACTCGCACCGGAAGGTCCAAGAACTCCGGCGCCAGAAGGAGATGGTGAAGGTCCACCAACACCAAATGTTGCAACTACAAGTCCAACATCATCACAACATTATGTTCGATGGACCATCCAACGGTGACGATTACTTGATCCATCAACACGTGGGACCCGATTTCACGCACCTCATGTAG 993 0.4773 MEAQEFFQTTFLPQFGSSSSDNNLTTTNVSTAAAASSDHFIVEDLFDFSNDDDAAIGDPAFDSPPTISDNSPPLETNVSSNFFMDNSCQNSVDGPFSGELSVPYDDLAELEWLSKFDEESFSSEDLQKLELISGMKASNDAASKTHDESNSILHPPQVSVPAKARSKRPRGPPCNWTSRLLVLSSPTIATTSSRSDIISPPKKPSPRKRDHGDGEGRKCLHCATDKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVQELRRQKEMVKVHQHQMLQLQVQHHHNIMFDGPSNGDDYLIHQHVGPDFTHLM* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0506 330 CDD ZnF_GATA 218 265 IPR000679 GO:0006355|GO:0043565
Psa5g0506 330 PANTHER GATA TRANSCRIPTION FACTOR 1 330 - -
Psa5g0506 330 Gene3D - 212 263 IPR013088 GO:0006355|GO:0008270
Psa5g0506 330 ProSitePatterns GATA-type zinc finger domain. 219 244 IPR000679 GO:0006355|GO:0043565
Psa5g0506 330 MobiDBLite consensus disorder prediction 191 215 - -
Psa5g0506 330 Pfam GATA zinc finger 219 252 IPR000679 GO:0006355|GO:0043565
Psa5g0506 330 SMART GATA_3 213 263 IPR000679 GO:0006355|GO:0043565
Psa5g0506 330 ProSiteProfiles GATA-type zinc finger domain profile. 213 249 IPR000679 GO:0006355|GO:0043565
Psa5g0506 330 MobiDBLite consensus disorder prediction 139 156 - -
Psa5g0506 330 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 214 276 - -
Psa5g0506 330 MobiDBLite consensus disorder prediction 139 176 - -
Psa5g0506 330 MobiDBLite consensus disorder prediction 201 215 - -
Psa5g0506 330 PANTHER GATA TRANSCRIPTION FACTOR 1 330 - -
Psa5g0506 330 PIRSF Txn_fac_GATA_plant 14 308 IPR016679 GO:0003677|GO:0005634|GO:0045893
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0506 Psa-Chr5 40387683 40391983 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0506 33 330 C2C2-Gata Transcription Factor Family AT4G32890 48.328 2.87e-86 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Psa5g0506 GATA 1.6e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0506 - - gmx:100776588 396.741