Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0496 ATGGAGTCTGTTGCCTCCAGTTCCAATTCAACACCAAATGACACCAACAATAATAACCGCCGCCGCCACTCTCGTTTCAAACACAGCCAACCAATTTCAGACAGAATAGTAAGAGCTCTCCGCCACCATCTCCGTCTCCTCCACCGTACCGGCTCAACCTTCTTCATATTCGGCGCAACCGGTAACGTCTACACAGTAACATTATCCCCTACACCCACATGCACGTGCCCGGACCGAACAACCCCATGCAAACACATAATCTTTGTCTTGATTCGAGTTCTAGGCGTTTCGCAAAACGACGCGTGTGTCCGACGAAGAAACCTACGACCATGTCATCTTCAAAGACTCCTTAACATGCCAACGTTGCCGGAAGCGGTTGCAGGGTTTACGCTACGACAGAGATTTCATCAGCTGTTCTTTGAAGGAGGGTCTAAGAAGGGGAAGAATAATGTAGAGATGGAAGAAGGTTCGACATGTCCGGTCTGTCTTGAAGAGATGCGGAAGGAAGAAAAGTTGGTGGCTTGTGGAACATGTAGGAATGTTATTCATGAAGAGTGTTTGGTTAGGTGGAAGAGAACTCGAGGAAGAAGATCGGCGAGTTGTGTGATTTGTAGGGCAAGGTGGAGGGATAGAGTGGAACAAGATAAGTATGTTAATCTTTCTGCTTATGTTAGTGAGGATGATTTTAGGGCACAATCATCTGGGGGGATATGTAATGACTAG 723 0.4703 MESVASSSNSTPNDTNNNNRRRHSRFKHSQPISDRIVRALRHHLRLLHRTGSTFFIFGATGNVYTVTLSPTPTCTCPDRTTPCKHIIFVLIRVLGVSQNDACVRRRNLRPCHLQRLLNMPTLPEAVAGFTLRQRFHQLFFEGGSKKGKNNVEMEEGSTCPVCLEEMRKEEKLVACGTCRNVIHEECLVRWKRTRGRRSASCVICRARWRDRVEQDKYVNLSAYVSEDDFRAQSSGGICND* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0496 240 PANTHER RING FINGER AND SWIM DOMAIN-CONTAINING PROTEIN 2 1 228 IPR039903 GO:0061630
Psa5g0496 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 143 222 IPR013083 -
Psa5g0496 240 Pfam SWIM zinc finger 64 92 IPR007527 GO:0008270
Psa5g0496 240 SUPERFAMILY RING/U-box 150 211 - -
Psa5g0496 240 PANTHER - 1 228 - -
Psa5g0496 240 MobiDBLite consensus disorder prediction 1 17 - -
Psa5g0496 240 MobiDBLite consensus disorder prediction 1 28 - -
Psa5g0496 240 ProSiteProfiles Zinc finger SWIM-type profile. 64 94 IPR007527 GO:0008270
Psa5g0496 240 Pfam Ring finger domain 158 205 IPR001841 -
Psa5g0496 240 ProSiteProfiles Zinc finger RING-type profile. 159 205 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0496 143 215 C3H Transcription Factor Family AT3G58720 32.895 1.57e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0496 - - var:108321788 342.813
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0496 5 39486072 39487278 Psa5g0496 5 39486072 39487278 ECH