Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0490 ATGAATAAGTTGCTTATGGAGGAAAATGATCGGTTGCAGAAACAAGTCTCACATCTTGTGTATGAGAATAGTGTTTTCAGACAACATACACCAAATGGAGCTATTGCCACGACAGATACAAGTTGTGAGTCAGTGGTAACAAGCGGTCAGCAGCATCCACCAAGGGATGCTAGTCCTGCTGGACTTTTGTCCATTGCAGAGGAGACTTTAGCAGAGTTTCTATCAAAGGCTACTGGAACTGCTGTTGAGTGGGTCCAAATGCCCGGTATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCAATTTCTCATGGTTCCCCTGGAGTGGCCGCACGTGCCTGCGGCCTTGTGGGTCTTGAACCTGCCAGGGTTGCTGAAATCCTCAAAGATAGGCTCGCGTGGTATCGCGATTGCCGAACCGTGGACGTTCTCAATGTTATGTCTACGGGAAATGGAGGAACCATTGAATTGCTCTATATGCAGTTGTATGCACCAACGACTTTAGCACCAGGGCGTGACTTCTGGTTGTTGCGCTACACATCACTTTTGGAGGATGGTAGTCTTGTTGTGTGTGAAAGATCACTTAACAACATTCAAAATGGTCCTAGCATGCCTCCAGTGCCGCATTTTGTTAGAGCTGATGTGCTGCCAAGCGGGTATCTGATTAGGCCTTGTGAAGGAGGGGGATCCATTATTCATATTGTTGATCATATGCTTTTAGAGCCCTGGAGTGTACCTGAAGTTTTGCGCCCACTTTACGAGTCATCTATGCTGCTTGCCCAGAGAACAACTATGGCTGCTTTACGTCATTTGAGGCAGATTTCTCAAGAAGTTTCTCAGCCAAGTGTGACGGGATGGGGAAGAAGGCCTGCAGCTCTACGCACGCTTAGTCAGAGATTGAGCAAGGGATTCAATGAAGCTGTGAACGGATTTACAGATGATGGATGGTCCATGTTAGAGAGTGATGGCATTGATGATGTCACCCTAATTGTGAATTCATCTCCTAGCAAGATGATGGGAATAAATAATGGTTATAATAACAGCGGATTTCCATCTGTCACCAGTTCTGTACTATGTGCCAAAGCTTCCATGTTGTTACAGAATGTCCCTCCGGCTATTCTTCTTAGGTTCTTGCGAGAACACAGATCAGAATGGGCAGATACAAGTATTGATGCTTACTCAGCTGCTGCCATTAAAGCTGGTCCTTGTAGCTTGCCAGGGACCAGACCAGGAAGTTTTGGTGGTCAGGTTATTCTTCCACTAGCTCACACAATTGAGCATGAAGAGTTCATGGAGGTTATTAAGCTTGAAAACATGGGCTACTATAGGGACGATATGACAATGCCTGGTGATATTTTCCTTTTGCAACTTTGCAGTGGAGTGGATGAGCATGCAGTTGGCACAAGTGCAGAGCTTATTTTTGCTCCAATAGATGCATCTTTCTCTGATGATGCACCCATTTTGCCTTCTGGTTTTCGCATAATACCTCTTGATTCTGCCACGGATGCTGCTAGTCCAAACCGTACACTCGATCTTGCTTCTGCACTTGAGGTCGGAACCACAGGAAACAAAGCAGGTGGTGACAATTCAGGTCATTCAGGGAGCACAAAATCTGTGATGACAATAGCATTCCAGTTTGCATTTGACGTCCACCTTCAAGATAATATAGCAGCTATGGCGCGACAGTATGTGCGCAGCATTGTCGCATCTGTTCAGAGGGTTTCATTAGCACTTTCTCCTTCGCGCTTTGGTTCTCAGAATGCATTTCACTCACCACCCGGAACTCCTGAGGCACAAACACTTACTCGATGGATCTGTAACAGCTATAGATTCTATCTAGGCGTAGAATTACTAAAGTCCGAAGGCAATGAATCCATACTCAAATCCCTTTGGCATCATTCAGATGCAGTTCTATGCTGCTCTCTAAAGGCATTACCTGTTTTTACGTTTGCAAACCAAGCTGGACTTGACATGCTTGAAACCACCTTGGTTGCACTTCAAGACATCACACTGGAAAAGATCTTTGATGACAATGGAAAGAAAACTCTATGCACTGAATTCCCCCAGATAATGCAGCAGGGTTTCATGTGTATTCAAGGTGGTATTTGTTTATCTAGCATGGGGAGGCCAATAACATATGAGAGAGCAGTAGCATGGAAAGTGTTAAACGAAGAAGAATCAGCTCATTGCATATGTTTTATGTTTATCAATTGGTCATTTGTCTAG 2226 0.4497 MNKLLMEENDRLQKQVSHLVYENSVFRQHTPNGAIATTDTSCESVVTSGQQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGSPGVAARACGLVGLEPARVAEILKDRLAWYRDCRTVDVLNVMSTGNGGTIELLYMQLYAPTTLAPGRDFWLLRYTSLLEDGSLVVCERSLNNIQNGPSMPPVPHFVRADVLPSGYLIRPCEGGGSIIHIVDHMLLEPWSVPEVLRPLYESSMLLAQRTTMAALRHLRQISQEVSQPSVTGWGRRPAALRTLSQRLSKGFNEAVNGFTDDGWSMLESDGIDDVTLIVNSSPSKMMGINNGYNNSGFPSVTSSVLCAKASMLLQNVPPAILLRFLREHRSEWADTSIDAYSAAAIKAGPCSLPGTRPGSFGGQVILPLAHTIEHEEFMEVIKLENMGYYRDDMTMPGDIFLLQLCSGVDEHAVGTSAELIFAPIDASFSDDAPILPSGFRIIPLDSATDAASPNRTLDLASALEVGTTGNKAGGDNSGHSGSTKSVMTIAFQFAFDVHLQDNIAAMARQYVRSIVASVQRVSLALSPSRFGSQNAFHSPPGTPEAQTLTRWICNSYRFYLGVELLKSEGNESILKSLWHHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDNGKKTLCTEFPQIMQQGFMCIQGGICLSSMGRPITYERAVAWKVLNEEESAHCICFMFINWSFV* 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0490 741 PANTHER CLASS III HD-ZIP PROTEIN CNA1 1 741 - -
Psa5g0490 741 Pfam MEKHLA domain 600 740 IPR013978 -
Psa5g0490 741 CDD START_ArGLABRA2_like 59 274 - -
Psa5g0490 741 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 741 IPR044830 GO:0003700
Psa5g0490 741 SMART START_1 64 274 IPR002913 GO:0008289
Psa5g0490 741 SUPERFAMILY Bet v1-like 64 275 - -
Psa5g0490 741 ProSiteProfiles START domain profile. 55 283 IPR002913 GO:0008289
Psa5g0490 741 Pfam START domain 65 273 IPR002913 GO:0008289
Psa5g0490 741 Gene3D - 98 280 IPR023393 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0490 Psa-Chr5 38989075 38995615 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0490 1 741 Homeobox Transcription Factor Family AT4G32880 78.371 0.0 1219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0490 K09338 - gmx:100815727 1401.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0490 5 38989075 38995615 Psa5g0490 5 38989075 38995615 ECH